KEGG   PATHWAY: nsi00020
Entry
nsi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neisseria mucosa FDAARGOS_260
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nsi00020  Citrate cycle (TCA cycle)
nsi00020

Module
nsi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nsi00020]
nsi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nsi00020]
nsi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nsi00020]
nsi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nsi00020]
Other DBs
GO: 0006099
Organism
Neisseria mucosa FDAARGOS_260 [GN:nsi]
Gene
A6J88_12585  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A6J88_06895  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A6J88_06675  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A6J88_12580  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A6J88_12575  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
A6J88_12565  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A6J88_13640  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A6J88_09450  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A6J88_12550  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A6J88_12555  succinyl-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A6J88_12600  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A6J88_12595  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A6J88_12610  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A6J88_12605  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
A6J88_13680  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A6J88_07595  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A6J88_11465  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A6J88_04340  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A6J88_09435  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A6J88_09445  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nsi00010  Glycolysis / Gluconeogenesis
nsi00061  Fatty acid biosynthesis
nsi00071  Fatty acid degradation
nsi00190  Oxidative phosphorylation
nsi00220  Arginine biosynthesis
nsi00250  Alanine, aspartate and glutamate metabolism
nsi00280  Valine, leucine and isoleucine degradation
nsi00350  Tyrosine metabolism
nsi00470  D-Amino acid metabolism
nsi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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