KEGG   PATHWAY: nta00020
Entry
nta00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nicotiana tabacum (common tobacco)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nta00020  Citrate cycle (TCA cycle)
nta00020

Module
nta_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nta00020]
nta_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nta00020]
nta_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nta00020]
nta_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nta00020]
nta_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nta00020]
Other DBs
GO: 0006099
Organism
Nicotiana tabacum (common tobacco) [GN:nta]
Gene
107815303  citrate synthase 3, peroxisomal [KO:K01647] [EC:2.3.3.1]
107791757  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
107822424  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
107779254  cit1; citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
107778559  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
107766682  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
107819406  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
107793546  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
107795386  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
107778993  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
107799450  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
107776338  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
107781279  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
107787579  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
107779772  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
107778837  ACO; aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
107774559  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
107776610  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
107825601  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107759563  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
107768947  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
107801694  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
107816938  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial-like [KO:K00031] [EC:1.1.1.42]
107812507  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
107814140  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
107809524  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
107815853  IDH; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
107782843  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
107807928  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107813330  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
107806214  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107814521  3-isopropylmalate dehydrogenase, chloroplastic [KO:K00030] [EC:1.1.1.41]
107804365  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107781243  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107772051  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
107813217  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
107760583  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
107800735  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107828007  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107819849  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107813704  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
107821052  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
107802918  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
107794842  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
107783795  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
107823550  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
107782283  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
107803150  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
107816379  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
107783576  succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107830273  succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107791622  succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107820527  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107826036  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107827369  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107768302  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107777278  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
107795955  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
107809996  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107802674  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107782822  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107801918  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
3205233  sdh3; succinate dehydrogenase subunit 3 [KO:K00236]
3205214  sdh3; succinate dehydrogenase subunit 3 [KO:K00236]
3205300  sdh3; succinate dehydrogenase subunit 3 [KO:K00236]
3205327  orf125e; hypothetical protein [KO:K25801]
107824431  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
107776946  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
107794640  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
107763505  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
107810010  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
107772922  NtRed-2; malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
107817292  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107773752  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
107823900  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107775935  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
107791360  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
107791114  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107787080  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
107820966  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
107788327  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
107780752  malate dehydrogenase 2, mitochondrial [KO:K00026] [EC:1.1.1.37]
107804686  gMDH; malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
107797501  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
107821463  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
107795174  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
107783258  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
107776000  phosphoenolpyruvate carboxykinase [ATP]-like [KO:K01610] [EC:4.1.1.49]
107761446  phosphoenolpyruvate carboxykinase [ATP]-like [KO:K01610] [EC:4.1.1.49]
107805694  phosphoenolpyruvate carboxykinase [ATP]-like [KO:K01610] [EC:4.1.1.49]
107770390  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
107760137  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107799031  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
107760338  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
107797927  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
107814677  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107825096  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
107798513  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107795071  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
107830854  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
107763479  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
107797637  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
107831547  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
107820994  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
107797920  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
107818291  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
107815578  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
107803873  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
107813986  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
107764742  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
107817385  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
107802375  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
107827422  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
107817052  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
107772318  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
107797489  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
107768212  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
107788125  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
107809523  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nta00010  Glycolysis / Gluconeogenesis
nta00053  Ascorbate and aldarate metabolism
nta00061  Fatty acid biosynthesis
nta00062  Fatty acid elongation
nta00071  Fatty acid degradation
nta00190  Oxidative phosphorylation
nta00220  Arginine biosynthesis
nta00250  Alanine, aspartate and glutamate metabolism
nta00280  Valine, leucine and isoleucine degradation
nta00350  Tyrosine metabolism
nta00470  D-Amino acid metabolism
nta00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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