KEGG   PATHWAY: nte03420
Entry
nte03420                    Pathway                                
Name
Nucleotide excision repair - Neurospora tetrasperma
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
nte03420  Nucleotide excision repair
nte03420

Other DBs
GO: 0006289
Organism
Neurospora tetrasperma [GN:nte]
Gene
NEUTE1DRAFT116888  NEUTE1DRAFT_116888; ring-box 1 [KO:K03868] [EC:2.3.2.32]
NEUTE1DRAFT146458  NEUTE1DRAFT_146458; hypothetical protein [KO:K10609]
NEUTE1DRAFT145059  NEUTE1DRAFT_145059; hypothetical protein [KO:K10610]
NEUTE1DRAFT78478  NEUTE1DRAFT_78478; hypothetical protein [KO:K10838]
NEUTE1DRAFT124463  NEUTE1DRAFT_124463; hypothetical protein [KO:K10838]
NEUTE1DRAFT117137  NEUTE1DRAFT_117137; hypothetical protein [KO:K10839]
NEUTE1DRAFT120422  NEUTE1DRAFT_120422; hypothetical protein [KO:K10570]
NEUTE1DRAFT121828  NEUTE1DRAFT_121828; hypothetical protein [KO:K10841]
NEUTE1DRAFT70543  NEUTE1DRAFT_70543; DNA-directed RNA polymerase II largest subunit [KO:K03006] [EC:2.7.7.6]
NEUTE1DRAFT47767  NEUTE1DRAFT_47767; hypothetical protein [KO:K03006] [EC:2.7.7.6]
NEUTE1DRAFT124967  NEUTE1DRAFT_124967; DNA-dependent RNA polymerase II RPB140 [KO:K03010] [EC:2.7.7.6]
NEUTE1DRAFT83471  NEUTE1DRAFT_83471; hypothetical protein [KO:K03011]
NEUTE1DRAFT114768  NEUTE1DRAFT_114768; hypothetical protein [KO:K03012]
NEUTE1DRAFT145772  NEUTE1DRAFT_145772; DNA-directed RNA polymerases II 24 kDa polypeptide [KO:K03013]
NEUTE1DRAFT81564  NEUTE1DRAFT_81564; DNA-directed RNA polymerases I [KO:K03014]
NEUTE1DRAFT150414  NEUTE1DRAFT_150414; hypothetical protein [KO:K03015]
NEUTE1DRAFT110529  NEUTE1DRAFT_110529; hypothetical protein [KO:K03017]
NEUTE1DRAFT119050  NEUTE1DRAFT_119050; hypothetical protein [KO:K03007]
NEUTE1DRAFT99462  NEUTE1DRAFT_99462; hypothetical protein [KO:K03009]
NEUTE1DRAFT58240  NEUTE1DRAFT_58240; hypothetical protein [KO:K03008]
NEUTE1DRAFT120280  NEUTE1DRAFT_120280; hypothetical protein [KO:K02202] [EC:2.7.11.22 2.7.11.23]
NEUTE1DRAFT92029  NEUTE1DRAFT_92029; hypothetical protein [KO:K10842]
NEUTE1DRAFT76685  NEUTE1DRAFT_76685; hypothetical protein [KO:K06634]
NEUTE1DRAFT81093  NEUTE1DRAFT_81093; DNA repair helicase RAD25 [KO:K10843] [EC:5.6.2.4]
NEUTE1DRAFT130389  NEUTE1DRAFT_130389; hypothetical protein [KO:K10844] [EC:5.6.2.3]
NEUTE1DRAFT84322  NEUTE1DRAFT_84322; hypothetical protein [KO:K03141]
NEUTE1DRAFT84011  NEUTE1DRAFT_84011; hypothetical protein [KO:K03142]
NEUTE1DRAFT147077  NEUTE1DRAFT_147077; hypothetical protein [KO:K03143]
NEUTE1DRAFT87562  NEUTE1DRAFT_87562; hypothetical protein [KO:K03144]
NEUTE1DRAFT70166  NEUTE1DRAFT_70166; hypothetical protein [KO:K10846]
NEUTE1DRAFT122777  NEUTE1DRAFT_122777; hypothetical protein [KO:K10847]
NEUTE1DRAFT144541  NEUTE1DRAFT_144541; hypothetical protein [KO:K07466]
NEUTE1DRAFT78687  NEUTE1DRAFT_78687; hypothetical protein [KO:K10739]
NEUTE1DRAFT143911  NEUTE1DRAFT_143911; hypothetical protein [KO:K10740]
NEUTE1DRAFT125187  NEUTE1DRAFT_125187; hypothetical protein [KO:K10848] [EC:3.1.-.-]
NEUTE1DRAFT68281  NEUTE1DRAFT_68281; hypothetical protein [KO:K10849]
NEUTE1DRAFT120002  NEUTE1DRAFT_120002; hypothetical protein [KO:K02327] [EC:2.7.7.7]
NEUTE1DRAFT76964  NEUTE1DRAFT_76964; hypothetical protein [KO:K02328]
NEUTE1DRAFT128869  NEUTE1DRAFT_128869; hypothetical protein [KO:K03504]
NEUTE1DRAFT66114  NEUTE1DRAFT_66114; hypothetical protein [KO:K03505]
NEUTE1DRAFT123761  NEUTE1DRAFT_123761; DNA polymerase epsilon [KO:K02324] [EC:2.7.7.7]
NEUTE1DRAFT120353  NEUTE1DRAFT_120353; hypothetical protein [KO:K02325] [EC:2.7.7.7]
NEUTE1DRAFT126986  NEUTE1DRAFT_126986; hypothetical protein [KO:K04802]
NEUTE1DRAFT65451  NEUTE1DRAFT_65451; hypothetical protein [KO:K10754]
NEUTE1DRAFT144139  NEUTE1DRAFT_144139; hypothetical protein [KO:K10755]
NEUTE1DRAFT73134  NEUTE1DRAFT_73134; activator 1 41 kDa subunit [KO:K10755]
NEUTE1DRAFT130196  NEUTE1DRAFT_130196; hypothetical protein [KO:K10756]
NEUTE1DRAFT65455  NEUTE1DRAFT_65455; hypothetical protein [KO:K10756]
NEUTE1DRAFT41251  NEUTE1DRAFT_41251; hypothetical protein [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
nte03020  RNA polymerase
nte04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   
LinkDB

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