KEGG   PATHWAY: oan00020
Entry
oan00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella anthropi ATCC 49188
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oan00020  Citrate cycle (TCA cycle)
oan00020

Module
oan_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oan00020]
oan_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:oan00020]
oan_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:oan00020]
oan_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:oan00020]
oan_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oan00020]
Other DBs
GO: 0006099
Organism
Brucella anthropi ATCC 49188 [GN:oan]
Gene
Oant_2103  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Oant_2042  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Oant_2102  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Oant_0105  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Oant_1992  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Oant_0933  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Oant_0934  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Oant_2063  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Oant_0938  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Oant_3554  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Oant_0932  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Oant_0931  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Oant_2146  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
Oant_0953  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Oant_0954  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Oant_0951  Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
Oant_0952  Succinate dehydrogenase hydrophobic membrane anchor [KO:K00242]
Oant_2225  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Oant_3022  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Oant_0930  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Oant_4597  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Oant_1119  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Oant_0829  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Oant_0661  Transketolase central region [KO:K00163] [EC:1.2.4.1]
Oant_2059  dehydrogenase E1 component [KO:K00161] [EC:1.2.4.1]
Oant_2060  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Oant_2061  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oan00010  Glycolysis / Gluconeogenesis
oan00053  Ascorbate and aldarate metabolism
oan00061  Fatty acid biosynthesis
oan00062  Fatty acid elongation
oan00071  Fatty acid degradation
oan00190  Oxidative phosphorylation
oan00220  Arginine biosynthesis
oan00250  Alanine, aspartate and glutamate metabolism
oan00280  Valine, leucine and isoleucine degradation
oan00350  Tyrosine metabolism
oan00470  D-Amino acid metabolism
oan00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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