KEGG   PATHWAY: obr00010
Entry
obr00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Oryza brachyantha (malo sina)
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
obr00010  Glycolysis / Gluconeogenesis
obr00010

Module
obr_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:obr00010]
obr_M00002  Glycolysis, core module involving three-carbon compounds [PATH:obr00010]
obr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:obr00010]
obr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:obr00010]
Other DBs
GO: 0006096 0006094
Organism
Oryza brachyantha (malo sina) [GN:obr]
Gene
102720391  LOW QUALITY PROTEIN: hexokinase-9-like [KO:K00844] [EC:2.7.1.1]
102722808  hexokinase-8 [KO:K00844] [EC:2.7.1.1]
102707738  hexokinase-6 [KO:K00844] [EC:2.7.1.1]
102703260  hexokinase-3 [KO:K00844] [EC:2.7.1.1]
102714644  hexokinase-7 [KO:K00844] [EC:2.7.1.1]
102719589  hexokinase-10 [KO:K00844] [EC:2.7.1.1]
102711067  hexokinase-5 [KO:K00844] [EC:2.7.1.1]
102708539  hexokinase-4, chloroplastic [KO:K00844] [EC:2.7.1.1]
102703706  hexokinase-1-like [KO:K00844] [EC:2.7.1.1]
102713210  hexokinase-1-like [KO:K00844] [EC:2.7.1.1]
102706554  glucose-6-phosphate isomerase, cytosolic B [KO:K01810] [EC:5.3.1.9]
102718204  glucose-6-phosphate isomerase 1, chloroplastic-like [KO:K01810] [EC:5.3.1.9]
102700734  glucose-6-phosphate isomerase 1, chloroplastic-like [KO:K01810] [EC:5.3.1.9]
102706889  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
102700095  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
102719110  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
102712812  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
102721849  ATP-dependent 6-phosphofructokinase 3-like [KO:K00850] [EC:2.7.1.11]
102703031  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
102722800  LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase 2-like [KO:K00850] [EC:2.7.1.11]
102717733  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
102713489  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
102712113  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
102710277  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [KO:K00895] [EC:2.7.1.90]
102717073  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
102703600  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like isoform X3 [KO:K00895] [EC:2.7.1.90]
102718580  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [KO:K00895] [EC:2.7.1.90]
102703610  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha isoform X1 [KO:K00895] [EC:2.7.1.90]
102705481  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
102704318  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
102705436  fructose-1,6-bisphosphatase, cytosolic-like [KO:K03841] [EC:3.1.3.11]
102702203  fructose-1,6-bisphosphatase, chloroplastic isoform X1 [KO:K03841] [EC:3.1.3.11]
102721788  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
102715352  fructose-bisphosphate aldolase 3, cytoplasmic [KO:K01623] [EC:4.1.2.13]
102721837  fructose-bisphosphate aldolase 1, cytoplasmic [KO:K01623] [EC:4.1.2.13]
102717904  fructose-bisphosphate aldolase 5, cytosolic [KO:K01623] [EC:4.1.2.13]
102701380  fructose-bisphosphate aldolase 2, cytoplasmic-like [KO:K01623] [EC:4.1.2.13]
102722882  fructose-bisphosphate aldolase 1, cytoplasmic-like [KO:K01623] [EC:4.1.2.13]
102706417  fructose-bisphosphate aldolase, chloroplastic [KO:K01623] [EC:4.1.2.13]
102715700  triosephosphate isomerase, cytosolic [KO:K01803] [EC:5.3.1.1]
102704015  triosephosphate isomerase, cytosolic-like [KO:K01803] [EC:5.3.1.1]
102713397  triosephosphate isomerase, chloroplastic [KO:K01803] [EC:5.3.1.1]
102705220  glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic-like [KO:K00134] [EC:1.2.1.12]
102700125  glyceraldehyde-3-phosphate dehydrogenase 3, cytosolic [KO:K00134] [EC:1.2.1.12]
102704814  glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like [KO:K00134] [EC:1.2.1.12]
102706275  glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic [KO:K00134] [EC:1.2.1.12]
102700729  glyceraldehyde-3-phosphate dehydrogenase, cytosolic [KO:K00134] [EC:1.2.1.12]
102702530  phosphoglycerate kinase, cytosolic [KO:K00927] [EC:2.7.2.3]
102714560  phosphoglycerate kinase, chloroplastic [KO:K00927] [EC:2.7.2.3]
102705922  phosphoglycerate kinase, cytosolic [KO:K00927] [EC:2.7.2.3]
102701580  phosphoglycerate kinase-like [KO:K00927] [EC:2.7.2.3]
102705046  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1-like [KO:K01834] [EC:5.4.2.11]
102720244  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1-like [KO:K01834] [EC:5.4.2.11]
107303395  phosphoglycerate mutase-like protein 4 [KO:K15634] [EC:5.4.2.11]
102719641  phosphoglycerate mutase-like protein 4 [KO:K15634] [EC:5.4.2.11]
102717204  phosphoglycerate mutase-like protein 4 [KO:K15634] [EC:5.4.2.11]
102722606  phosphoglycerate mutase-like protein 4 [KO:K15634] [EC:5.4.2.11]
102703531  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
102712346  2,3-bisphosphoglycerate-independent phosphoglycerate mutase-like [KO:K15633] [EC:5.4.2.12]
102703581  2,3-bisphosphoglycerate-independent phosphoglycerate mutase-like [KO:K15633] [EC:5.4.2.12]
102702734  cytosolic enolase 3 [KO:K01689] [EC:4.2.1.11]
102710132  enolase 1 [KO:K01689] [EC:4.2.1.11]
102711291  enolase 1, chloroplastic [KO:K01689] [EC:4.2.1.11]
102702497  enolase [KO:K01689] [EC:4.2.1.11]
102708766  plastidial pyruvate kinase 2 [KO:K00873] [EC:2.7.1.40]
102708124  pyruvate kinase, cytosolic isozyme-like [KO:K00873] [EC:2.7.1.40]
102711194  pyruvate kinase, cytosolic isozyme-like [KO:K00873] [EC:2.7.1.40]
102709826  pyruvate kinase, cytosolic isozyme-like [KO:K00873] [EC:2.7.1.40]
102714087  pyruvate kinase isozyme A, chloroplastic-like [KO:K00873] [EC:2.7.1.40]
102719105  pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
102705929  pyruvate kinase isozyme A, chloroplastic [KO:K00873] [EC:2.7.1.40]
102705575  pyruvate kinase 1, cytosolic [KO:K00873] [EC:2.7.1.40]
102702985  pyruvate kinase 1, cytosolic [KO:K00873] [EC:2.7.1.40]
102702885  pyruvate kinase isozyme G, chloroplastic-like [KO:K00873] [EC:2.7.1.40]
102699263  pyruvate kinase 1, cytosolic-like [KO:K00873] [EC:2.7.1.40]
102711981  pyruvate, phosphate dikinase 1, chloroplastic [KO:K01006] [EC:2.7.9.1]
102705327  pyruvate, phosphate dikinase 2 isoform X1 [KO:K01006] [EC:2.7.9.1]
102716846  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
102722954  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
102708250  pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [KO:K00161] [EC:1.2.4.1]
102717415  pyruvate dehydrogenase E1 component subunit beta-4, chloroplastic [KO:K00162] [EC:1.2.4.1]
102703538  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
102712383  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
102719045  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial [KO:K00162] [EC:1.2.4.1]
102716307  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
102713554  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
102699713  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
102713977  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
102721889  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
102713292  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
102712318  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
102707264  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
102708656  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
102701608  L-lactate dehydrogenase A [KO:K00016] [EC:1.1.1.27]
102720434  L-lactate dehydrogenase B-like [KO:K00016] [EC:1.1.1.27]
102710001  LOW QUALITY PROTEIN: pyruvate decarboxylase 2 [KO:K01568] [EC:4.1.1.1]
102700093  pyruvate decarboxylase 2-like [KO:K01568] [EC:4.1.1.1]
102719675  pyruvate decarboxylase 1 isoform X2 [KO:K01568] [EC:4.1.1.1]
102719033  pyruvate decarboxylase 3 [KO:K01568] [EC:4.1.1.1]
102718720  alcohol dehydrogenase-like 2 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
102718434  alcohol dehydrogenase class-3 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
102718438  alcohol dehydrogenase-like 7 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
102714206  alcohol dehydrogenase-like 2 isoform X1 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
102720369  alcohol dehydrogenase 2-like [KO:K18857] [EC:1.1.1.1]
102719808  alcohol dehydrogenase 1 [KO:K18857] [EC:1.1.1.1]
102720087  alcohol dehydrogenase 2 [KO:K18857] [EC:1.1.1.1]
102703840  alcohol dehydrogenase-like 6 [KO:K00001] [EC:1.1.1.1]
102722613  alcohol dehydrogenase-like 4 [KO:K00001] [EC:1.1.1.1]
102708756  aldo-keto reductase family 4 member C10-like isoform X5 [KO:K00002] [EC:1.1.1.2]
102722494  aldose reductase [KO:K00002] [EC:1.1.1.2]
102709039  NADPH-dependent aldo-keto reductase, chloroplastic-like [KO:K00002] [EC:1.1.1.2]
102709607  NADPH-dependent aldo-keto reductase, chloroplastic-like isoform X1 [KO:K00002] [EC:1.1.1.2]
102710982  aldo-keto reductase family 4 member C10-like [KO:K00002] [EC:1.1.1.2]
102709054  benzaldehyde dehydrogenase, mitochondrial-like [KO:K00128] [EC:1.2.1.3]
102711774  aldehyde dehydrogenase family 3 member F1-like [KO:K00128] [EC:1.2.1.3]
102712051  aldehyde dehydrogenase family 3 member F1-like [KO:K00128] [EC:1.2.1.3]
102706376  aldehyde dehydrogenase family 3 member F1-like [KO:K00128] [EC:1.2.1.3]
102704156  aldehyde dehydrogenase family 2 member B7, mitochondrial-like [KO:K00128] [EC:1.2.1.3]
102712119  aldehyde dehydrogenase family 3 member H1-like [KO:K00128] [EC:1.2.1.3]
102718507  aldehyde dehydrogenase family 3 member H1-like [KO:K00128] [EC:1.2.1.3]
102721194  aldehyde dehydrogenase family 7 member A1 [KO:K14085] [EC:1.2.1.31 1.2.1.8 1.2.1.3]
102701889  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
102703488  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
102720964  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
102706996  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
102711675  galactose mutarotase-like [KO:K01785] [EC:5.1.3.3]
102719852  galactose mutarotase-like [KO:K01785] [EC:5.1.3.3]
102712524  galactose mutarotase-like [KO:K01785] [EC:5.1.3.3]
102717894  galactose mutarotase-like [KO:K01785] [EC:5.1.3.3]
102722332  galactose mutarotase-like [KO:K01785] [EC:5.1.3.3]
102720591  galactose mutarotase-like [KO:K01785] [EC:5.1.3.3]
102713531  phosphoglucomutase, cytoplasmic 2 [KO:K01835] [EC:5.4.2.2]
102706040  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
102715137  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
102707641  putative glucose-6-phosphate 1-epimerase isoform X2 [KO:K01792] [EC:5.1.3.15]
102708865  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
102703779  putative glucose-6-phosphate 1-epimerase isoform X1 [KO:K01792] [EC:5.1.3.15]
102717981  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
102711341  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
102712384  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
102712072  multiple inositol polyphosphate phosphatase 1 [KO:K03103] [EC:3.1.3.62 3.1.3.80]
102720168  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
102714161  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
102711015  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
obr00020  Citrate cycle (TCA cycle)
obr00030  Pentose phosphate pathway
obr00500  Starch and sucrose metabolism
obr00620  Pyruvate metabolism
obr00640  Propanoate metabolism
obr00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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