KEGG   PATHWAY: oce03440
Entry
oce03440                    Pathway                                
Name
Homologous recombination - Oceanimonas sp. GK1
Description
Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.
Class
Genetic Information Processing; Replication and repair
Pathway map
oce03440  Homologous recombination
oce03440

Other DBs
GO: 0000724
Organism
Oceanimonas sp. GK1 [GN:oce]
Gene
GU3_15435  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
GU3_04070  single-strand binding protein [KO:K03111]
GU3_01915  DNA replication and repair protein RecF [KO:K03629]
GU3_04640  DNA repair protein RecO [KO:K03584]
GU3_11505  recombination protein RecR [KO:K06187]
GU3_15075  recA; recombinase A [KO:K03553]
GU3_02505  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
GU3_12500  ruvA; Holliday junction DNA helicase RuvA [KO:K03550]
GU3_12495  Holliday junction DNA helicase RuvB [KO:K03551] [EC:5.6.2.4]
GU3_12505  crossover junction endodeoxyribonuclease RuvC [KO:K01159] [EC:3.1.21.10]
GU3_02735  ATP-dependent DNA helicase RecG [KO:K03655] [EC:5.6.2.4]
GU3_05860  putative transcriptional regulator [KO:K03655] [EC:5.6.2.4]
GU3_11350  exodeoxyribonuclease V, beta subunit [KO:K03582] [EC:3.1.11.5]
GU3_11355  exodeoxyribonuclease V, gamma subunit [KO:K03583] [EC:3.1.11.5]
GU3_11345  exodeoxyribonuclease V, alpha subunit [KO:K03581] [EC:3.1.11.5]
GU3_12915  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
GU3_01920  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
GU3_11515  DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
GU3_06155  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
GU3_09895  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
GU3_05710  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
GU3_06785  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
GU3_06905  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
GU3_04455  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
GU3_03425  primosomal protein N' [KO:K04066] [EC:5.6.2.4]
GU3_07495  hypothetical protein [KO:K02317]
Reference
  Authors
Maloisel L, Fabre F, Gangloff S.
  Title
DNA polymerase delta is preferentially recruited during homologous recombination to promote heteroduplex DNA extension.
  Journal
Mol Cell Biol 28:1373-82 (2008)
DOI:10.1128/MCB.01651-07
Reference
  Authors
Haruta-Takahashi N, Iwasaki H.
  Title
[Recombination mediators]
  Journal
Seikagaku 79:449-53 (2007)
Reference
  Authors
Ouyang KJ, Woo LL, Ellis NA.
  Title
Homologous recombination and maintenance of genome integrity: Cancer and aging through the prism of human RecQ helicases.
  Journal
Mech Ageing Dev 129:425-40 (2008)
DOI:10.1016/j.mad.2008.03.003
Reference
  Authors
Kawabata M, Kawabata T, Nishibori M.
  Title
Role of recA/RAD51 family proteins in mammals.
  Journal
Acta Med Okayama 59:1-9 (2005)
DOI:10.18926/AMO/31987
Reference
  Authors
Prado F, Cortes-Ledesma F, Huertas P, Aguilera A.
  Title
Mitotic recombination in Saccharomyces cerevisiae.
  Journal
Curr Genet 42:185-98 (2003)
DOI:10.1007/s00294-002-0346-3
Reference
  Authors
Heyer WD, Li X, Rolfsmeier M, Zhang XP.
  Title
Rad54: the Swiss Army knife of homologous recombination?
  Journal
Nucleic Acids Res 34:4115-25 (2006)
DOI:10.1093/nar/gkl481
Reference
  Authors
Michel B, Boubakri H, Baharoglu Z, LeMasson M, Lestini R.
  Title
Recombination proteins and rescue of arrested replication forks.
  Journal
DNA Repair (Amst) 6:967-80 (2007)
DOI:10.1016/j.dnarep.2007.02.016
KO pathway
ko03440   
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