KEGG   PATHWAY: ocm00020
Entry
ocm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Oceanisphaera avium
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ocm00020  Citrate cycle (TCA cycle)
ocm00020

Module
ocm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ocm00020]
ocm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ocm00020]
ocm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ocm00020]
ocm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ocm00020]
Other DBs
GO: 0006099
Organism
Oceanisphaera avium [GN:ocm]
Gene
CBP12_01740  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CBP12_01285  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CBP12_12620  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CBP12_11755  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CBP12_05335  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
CBP12_01765  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CBP12_01770  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CBP12_12605  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CBP12_12945  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CBP12_01780  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CBP12_01775  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CBP12_01755  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CBP12_01760  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CBP12_01745  succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
CBP12_01750  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CBP12_10875  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CBP12_12690  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CBP12_12595  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CBP12_12600  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ocm00010  Glycolysis / Gluconeogenesis
ocm00061  Fatty acid biosynthesis
ocm00071  Fatty acid degradation
ocm00190  Oxidative phosphorylation
ocm00220  Arginine biosynthesis
ocm00250  Alanine, aspartate and glutamate metabolism
ocm00280  Valine, leucine and isoleucine degradation
ocm00350  Tyrosine metabolism
ocm00470  D-Amino acid metabolism
ocm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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