KEGG   PATHWAY: ocr00020
Entry
ocr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ochrobactrum sp. MT180101
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ocr00020  Citrate cycle (TCA cycle)
ocr00020

Module
ocr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ocr00020]
ocr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ocr00020]
ocr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ocr00020]
ocr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ocr00020]
ocr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ocr00020]
Other DBs
GO: 0006099
Organism
Ochrobactrum sp. MT180101 [GN:ocr]
Gene
HGK82_23445  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
HGK82_05400  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
HGK82_05405  citrate synthase [KO:K01647] [EC:2.3.3.1]
HGK82_05700  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HGK82_12925  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HGK82_05945  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HGK82_11415  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HGK82_11410  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HGK82_20250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HGK82_05595  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HGK82_11390  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HGK82_11420  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HGK82_11425  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HGK82_05180  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
HGK82_11315  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HGK82_11310  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HGK82_11325  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HGK82_11320  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HGK82_04795  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HGK82_18235  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HGK82_11430  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HGK82_10440  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
HGK82_11845  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HGK82_05615  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HGK82_05610  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
HGK82_05605  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ocr00010  Glycolysis / Gluconeogenesis
ocr00053  Ascorbate and aldarate metabolism
ocr00061  Fatty acid biosynthesis
ocr00071  Fatty acid degradation
ocr00190  Oxidative phosphorylation
ocr00220  Arginine biosynthesis
ocr00250  Alanine, aspartate and glutamate metabolism
ocr00280  Valine, leucine and isoleucine degradation
ocr00350  Tyrosine metabolism
ocr00470  D-Amino acid metabolism
ocr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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