KEGG   PATHWAY: oeu00020
Entry
oeu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Olea europaea var. sylvestris (wild olive)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oeu00020  Citrate cycle (TCA cycle)
oeu00020

Module
oeu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oeu00020]
oeu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:oeu00020]
oeu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oeu00020]
Other DBs
GO: 0006099
Organism
Olea europaea var. sylvestris (wild olive) [GN:oeu]
Gene
111402344  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
111370954  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
111386916  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111380935  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
111383696  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
111371340  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
111371534  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
111406346  ATP-citrate synthase alpha chain protein 1-like isoform X1 [KO:K01648] [EC:2.3.3.8]
111395048  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
111396180  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
111396181  ATP-citrate synthase alpha chain protein 1 isoform X1 [KO:K01648] [EC:2.3.3.8]
111371419  aconitate hydratase 3, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111395672  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
111379667  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
111386299  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
111375278  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
111379282  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
111381901  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111402008  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111399926  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111384314  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
111378529  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
111398036  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
111376510  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
111397370  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
111389678  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
111376811  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
111371034  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
111379960  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
111409974  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
111371329  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
111405484  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111382725  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111385338  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111396773  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111407430  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
111365449  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X1 [KO:K00234] [EC:1.3.5.1]
111404262  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111385552  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111389170  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111392214  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111390381  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
111406362  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
111393345  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
111410862  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
111371598  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
111391600  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
111402546  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
111382988  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111405257  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
111388346  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
111412447  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
111411968  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
111411969  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
111397232  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
111409457  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
111371698  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
111391683  phosphoenolpyruvate carboxykinase (ATP)-like isoform X1 [KO:K01610] [EC:4.1.1.49]
111377285  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
111387935  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
111397543  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like isoform X1 [KO:K00161] [EC:1.2.4.1]
111409912  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
111370874  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
111376292  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
111401800  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
111368049  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
111397099  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
111398007  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
111381579  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
111386415  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
111394387  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
111367715  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
111405964  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
111369602  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oeu00010  Glycolysis / Gluconeogenesis
oeu00053  Ascorbate and aldarate metabolism
oeu00061  Fatty acid biosynthesis
oeu00062  Fatty acid elongation
oeu00071  Fatty acid degradation
oeu00190  Oxidative phosphorylation
oeu00220  Arginine biosynthesis
oeu00250  Alanine, aspartate and glutamate metabolism
oeu00280  Valine, leucine and isoleucine degradation
oeu00350  Tyrosine metabolism
oeu00470  D-Amino acid metabolism
oeu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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