KEGG   PATHWAY: oih00020
Entry
oih00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Oceanobacillus iheyensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oih00020  Citrate cycle (TCA cycle)
oih00020

Module
oih_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oih00020]
oih_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:oih00020]
oih_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:oih00020]
oih_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:oih00020]
oih_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oih00020]
Other DBs
GO: 0006099
Organism
Oceanobacillus iheyensis [GN:oih]
Gene
OB2168  citZ; citrate synthase II [KO:K01647] [EC:2.3.3.1]
OB2269  citrate synthase III [KO:K01647] [EC:2.3.3.1]
OB1681  citB; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
OB2167  citC; isocitrate dehydrogenase (NADP+) [KO:K00031] [EC:1.1.1.42]
OB1089  oxoglutarate dehydrogenase E1 subunit (alpha-ketoglutarte dehydrogenase) [KO:K00164] [EC:1.2.4.2]
OB1090  2-oxoglutarate dehydrogenase E2 subunit (dihydrolipoamide S-succinyltransferase) [KO:K00658] [EC:2.3.1.61]
OB1867  branched-chain alpha-keto acid dehydrogenase E3 (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
OB1415  pdhD; pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
OB1544  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
OB1543  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
OB3115  coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
OB2113  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OB2112  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
OB2114  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
OB1132  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
OB2166  citH; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OB0946  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
OB1430  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
OB2315  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
OB1412  pdhA; pyruvate dehydrogenase E1 (lipoamide) alpha subunit [KO:K00161] [EC:1.2.4.1]
OB1413  pdhB; pyruvate dehydrogenase E1 (lipoamide) beta subunit [KO:K00162] [EC:1.2.4.1]
OB1414  pdhC; pyruvate dehydrogenase E2 (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oih00010  Glycolysis / Gluconeogenesis
oih00053  Ascorbate and aldarate metabolism
oih00061  Fatty acid biosynthesis
oih00071  Fatty acid degradation
oih00190  Oxidative phosphorylation
oih00220  Arginine biosynthesis
oih00250  Alanine, aspartate and glutamate metabolism
oih00280  Valine, leucine and isoleucine degradation
oih00350  Tyrosine metabolism
oih00470  D-Amino acid metabolism
oih00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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