KEGG   PATHWAY: oml00030
Entry
oml00030                    Pathway                                
Name
Pentose phosphate pathway - Oryzias melastigma (Indian medaka)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oml00030  Pentose phosphate pathway
oml00030

Module
oml_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:oml00030]
oml_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:oml00030]
oml_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:oml00030]
oml_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:oml00030]
Other DBs
GO: 0006098
Organism
Oryzias melastigma (Indian medaka) [GN:oml]
Gene
112160756  gpib; glucose-6-phosphate isomerase b [KO:K01810] [EC:5.3.1.9]
112141173  gpia; glucose-6-phosphate isomerase a [KO:K01810] [EC:5.3.1.9]
112159028  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
112159374  glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
112146589  pgls; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
112145329  h6pd; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
112158831  pgd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
112155487  rpe; ribulose-phosphate 3-epimerase isoform X1 [KO:K01783] [EC:5.1.3.1]
112144728  tkta; transketolase [KO:K00615] [EC:2.2.1.1]
112158629  transketolase [KO:K00615] [EC:2.2.1.1]
112159287  tktb; transketolase-like protein 2 [KO:K00615] [EC:2.2.1.1]
112160634  taldo1; transaldolase [KO:K00616] [EC:2.2.1.2]
112137517  rpia; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
112142378  shpk; sedoheptulokinase isoform X1 [KO:K11214] [EC:2.7.1.14]
112158730  dera; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
112149301  rbks; ribokinase [KO:K00852] [EC:2.7.1.15]
112147215  phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
112150512  pgm1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
112157016  pgm2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
112153379  prps1b; ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
112160154  ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
112142203  rgn; regucalcin [KO:K01053] [EC:3.1.1.17]
112148892  probable gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
112144644  glyctk; glycerate kinase isoform X2 [KO:K11529] [EC:2.7.1.165]
112140737  aldocb; fructose-bisphosphate aldolase C-B [KO:K01623] [EC:4.1.2.13]
112154088  aldoab; aldolase a, fructose-bisphosphate, b [KO:K01623] [EC:4.1.2.13]
112149379  aldoca; fructose-bisphosphate aldolase C-A [KO:K01623] [EC:4.1.2.13]
112153314  aldob; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
112147949  fbp2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
112148874  fructose-1,6-bisphosphatase 1 [KO:K03841] [EC:3.1.3.11]
112163411  fbp1b; fructose-1,6-bisphosphatase 1b [KO:K03841] [EC:3.1.3.11]
112155057  pfkla; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
112144439  ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
112151051  pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
112145768  pfkmb; phosphofructokinase, muscle b [KO:K00850] [EC:2.7.1.11]
112158822  pfkma; phosphofructokinase, muscle a [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
oml00010  Glycolysis / Gluconeogenesis
oml00040  Pentose and glucuronate interconversions
oml00052  Galactose metabolism
oml00230  Purine metabolism
oml00240  Pyrimidine metabolism
oml00340  Histidine metabolism
oml00630  Glyoxylate and dicarboxylate metabolism
oml00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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