KEGG   PATHWAY: omy00020
Entry
omy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Oncorhynchus mykiss (rainbow trout)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
omy00020  Citrate cycle (TCA cycle)
omy00020

Module
omy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:omy00020]
omy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:omy00020]
omy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:omy00020]
omy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:omy00020]
omy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:omy00020]
Other DBs
GO: 0006099
Organism
Oncorhynchus mykiss (rainbow trout) [GN:omy]
Gene
110528253  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
110492108  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
110532556  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
110538180  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
110498770  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
110486250  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
110502871  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
110538366  aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
110499095  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
110486418  aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
110500623  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
110521263  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
110501851  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
110495940  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
110498619  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
110516389  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
110520228  idh1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
110528465  uncharacterized protein LOC110528465 isoform X2 [KO:K00030] [EC:1.1.1.41]
118966137  isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
118966138  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
110491943  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
110499795  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
110532716  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
110493992  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
118944396  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
110509550  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
110523331  ogdhb; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
110526099  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
110522634  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
110529281  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
110497925  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
110505539  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
110521345  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
110492846  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
100301669  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
110497514  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
110501738  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110527962  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110493247  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110520344  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110496683  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
110488064  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
110520756  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
110528062  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
110492247  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
110494374  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
110508324  succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X2 [KO:K00236]
110530767  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
110503765  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
110507178  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
110515109  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
110515857  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
100136010  cmdg; malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
110486012  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
110531764  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
118936590  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
110537548  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
110533583  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
110509959  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
110518778  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
110533971  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
100135908  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
110489769  phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
110493880  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
110535379  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
110489633  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
110510070  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
110534083  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X2 [KO:K00161] [EC:1.2.4.1]
110494848  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
110528674  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
110509478  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
110533249  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
omy00010  Glycolysis / Gluconeogenesis
omy00053  Ascorbate and aldarate metabolism
omy00061  Fatty acid biosynthesis
omy00062  Fatty acid elongation
omy00071  Fatty acid degradation
omy00190  Oxidative phosphorylation
omy00220  Arginine biosynthesis
omy00250  Alanine, aspartate and glutamate metabolism
omy00280  Valine, leucine and isoleucine degradation
omy00350  Tyrosine metabolism
omy00470  D-Amino acid metabolism
omy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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