KEGG   PATHWAY: ota03008
Entry
ota03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Ostreococcus tauri
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
ota03008  Ribosome biogenesis in eukaryotes
ota03008

Organism
Ostreococcus tauri [GN:ota]
Gene
OT_ostta02g01350  Casein kinase II, regulatory subunit [KO:K03115]
OT_ostta12g02550  Serine/threonine-protein kinase, active site [KO:K03097] [EC:2.7.11.1]
OT_ostta07g04040  Nrap protein [KO:K14544]
OT_ostta16g00100  Ribosomal RNA-processing protein 7 [KO:K14545]
OT_ostta08g03090  Small-subunit processome, Utp12 [KO:K14546]
OT_ostta04g04010  WD40 repeat [KO:K14548]
OT_ostta15g01300  G-protein beta WD-40 repeat [KO:K14549]
OT_ostta08g00800  Armadillo-type fold [KO:K14550]
OT_ostta02g05390  Quinonprotein alcohol dehydrogenase-like superfamily [KO:K14552]
OT_ostta02g00410  WD40 repeat [KO:K14553]
OT_ostta17g00250  Quinonprotein alcohol dehydrogenase-like superfamily [KO:K14554]
OT_ostta08g01400  G-protein beta WD-40 repeat [KO:K14555]
OT_ostta14g00750  Quinoprotein amine dehydrogenase, beta chain-like [KO:K14556]
OT_ostta02g00960  U3 small nucleolar RNA-associated protein 6 [KO:K14557]
OT_ostta02g02490  WD40 repeat [KO:K14558]
OT_ostta05g01450  U3 small nucleolar ribonucleoprotein complex,subunit Mpp10p [KO:K14559]
OT_ostta14g00620  Ribosomal protein S4/S9, N-terminal [KO:K14560]
OT_ostta14g00140  Anticodon-binding [KO:K14561]
OT_ostta07g01200  Fibrillarin [KO:K14563] [EC:2.1.1.-]
OT_ostta08g00480  NOSIC [KO:K14564]
OT_ostta03g00690  NOSIC [KO:K14565]
OT_ostta02g01210  Ribosomal protein L7Ae conserved site [KO:K12845]
OT_ostta02g00640  Pseudouridine synthase/archaeosine transglycosylase [KO:K11131] [EC:5.4.99.-]
OT_ostta13g00670  Ribosomal protein L7Ae conserved site [KO:K11129]
OT_ostta02g01330  Translation elongation/initiation factor/Ribosomal, beta-barrel [KO:K11128]
OT_ostta05g00690  H/ACA ribonucleoprotein complex, subunit Nop10 [KO:K11130]
OT_ostta06g02130  Protein of unknown function DUF652 [KO:K14566]
OT_ostta04g00770  Small-subunit processome, Utp14 [KO:K14567]
OT_ostta18g01680  Ribosomal biogenesis,methyltransferase,EMG1/NEP1 [KO:K14568] [EC:2.1.1.260]
OT_ostta01g00910  Ribosomal biogenesis,methyltransferase,EMG1/NEP1 [KO:K14568] [EC:2.1.1.260]
OT_ostta12g02110  IQ motif, EF-hand binding site [KO:K14569]
OT_ostta05g03410  Domain of unknown function DUF1726 [KO:K14521] [EC:2.3.1.-]
OT_ostta07g03480  RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta [KO:K11108]
OT_ostta03g02850  POPLD [KO:K01164] [EC:3.1.26.5]
OT_ostta04g03790  Ribonuclease P/MRP protein subunit [KO:K03537] [EC:3.1.26.5]
OT_ostta11g00530  RNase P subunit p30 [KO:K03539] [EC:3.1.26.5]
OT_ostta06g01930  Exonuclease, RNase T/DNA polymerase III [KO:K14570] [EC:3.1.-.-]
OT_ostta08g01820  Exonuclease, RNase T/DNA polymerase III [KO:K14570] [EC:3.1.-.-]
OT_ostta06g03380  Putative 5-3 exonuclease [KO:K12618] [EC:3.1.13.-]
OT_ostta02g04030  NOG, C-terminal [KO:K06943]
OT_ostta01g02450  P-loop containing nucleoside triphosphate hydrolase [KO:K06943]
OT_ostta08g02180  P-loop containing nucleoside triphosphate hydrolase [KO:K14537]
OT_ostta06g01830  Guanine nucleotide-binding protein-like 3,N-terminal domain [KO:K14538]
OT_ostta17g01820  P-loop containing nucleoside triphosphate hydrolase [KO:K14571]
OT_ostta01g04120  von Willebrand factor, type A [KO:K14572]
OT_ostta10g02930  Nucleotide-binding, alpha-beta plait [KO:K14573]
OT_ostta06g04000  Nin one binding (NOB1) Zn-ribbon-like [KO:K11883]
OT_ostta13g01170  Small GTPase superfamily, Rho type [KO:K07936]
OT_ostta02g03490  Armadillo-type fold [KO:K14290]
OT_ostta16g00990  NMD3 [KO:K07562]
OT_ostta02g00562  Translation initiation factor IF6 [KO:K03264]
OT_ostta06g01480  Ribosome maturation protein SBDS, N-terminal [KO:K14574]
OT_ostta20g00730  Translation elongation/initiation factor/Ribosomal, beta-barrel [KO:K14536] [EC:3.6.5.-]
OT_ostta14g01110  P-loop containing nucleoside triphosphate hydrolase [KO:K14539] [EC:3.6.1.-]
OT_ostta03g05480  P-loop containing nucleoside triphosphate hydrolase [KO:K18532] [EC:2.7.4.3]
OT_ostta14g00290  RIO kinase, conserved site [KO:K07178] [EC:2.7.11.1]
OT_ostta06g01610  RIO2 kinase, winged helix, N-terminal [KO:K07179] [EC:2.7.11.1]
OstapCr01  rrs; small subunit ribosomal RNA [KO:K01979]
OstapCr06  rrs; small subunit ribosomal RNA [KO:K01979]
OstapMr04  rrl; large subunit ribosomal RNA [KO:K01982]
OstapCr02  rrl; large subunit ribosomal RNA [KO:K01982]
OstapCr05  rrl; large subunit ribosomal RNA [KO:K01982]
OstapCr04  rrf; unknown [KO:K01981]
OstapCr03  rrf; unknown [KO:K01981]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
ota03010  Ribosome
KO pathway
ko03008   
LinkDB

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