KEGG   PATHWAY: our00020
Entry
our00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Oligella urethralis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
our00020  Citrate cycle (TCA cycle)
our00020

Module
our_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:our00020]
our_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:our00020]
our_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:our00020]
our_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:our00020]
Other DBs
GO: 0006099
Organism
Oligella urethralis [GN:our]
Gene
CEQ07_04465  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CEQ07_04395  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CEQ07_04405  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CEQ07_09315  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CEQ07_02755  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CEQ07_02760  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CEQ07_02765  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CEQ07_06000  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CEQ07_06220  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CEQ07_06225  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CEQ07_09010  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
CEQ07_04450  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CEQ07_04455  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CEQ07_04440  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CEQ07_04445  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CEQ07_03090  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CEQ07_02680  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CEQ07_04430  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CEQ07_06010  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CEQ07_06005  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
our00010  Glycolysis / Gluconeogenesis
our00061  Fatty acid biosynthesis
our00071  Fatty acid degradation
our00190  Oxidative phosphorylation
our00220  Arginine biosynthesis
our00250  Alanine, aspartate and glutamate metabolism
our00280  Valine, leucine and isoleucine degradation
our00350  Tyrosine metabolism
our00470  D-Amino acid metabolism
our00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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