KEGG   PATHWAY: pald00020
Entry
pald00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas alloputida
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pald00020  Citrate cycle (TCA cycle)
pald00020

Module
pald_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pald00020]
pald_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pald00020]
pald_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pald00020]
pald_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pald00020]
pald_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pald00020]
Other DBs
GO: 0006099
Organism
Pseudomonas alloputida [GN:pald]
Gene
LU682_009140  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LU682_020390  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LU682_019280  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LU682_009980  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LU682_009985  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LU682_009165  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LU682_009170  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LU682_029415  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LU682_007985  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LU682_009175  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LU682_009185  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LU682_009180  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LU682_000560  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
LU682_009155  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LU682_009160  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LU682_009145  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LU682_009150  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
LU682_004800  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LU682_022110  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LU682_005040  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LU682_003540  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LU682_004075  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LU682_016020  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LU682_029320  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
LU682_029315  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
LU682_001125  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LU682_001625  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LU682_001620  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
LU682_002940  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pald00010  Glycolysis / Gluconeogenesis
pald00053  Ascorbate and aldarate metabolism
pald00061  Fatty acid biosynthesis
pald00071  Fatty acid degradation
pald00190  Oxidative phosphorylation
pald00220  Arginine biosynthesis
pald00250  Alanine, aspartate and glutamate metabolism
pald00280  Valine, leucine and isoleucine degradation
pald00350  Tyrosine metabolism
pald00470  D-Amino acid metabolism
pald00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system