KEGG   PATHWAY: pald03430
Entry
pald03430                   Pathway                                
Name
Mismatch repair - Pseudomonas alloputida
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
pald03430  Mismatch repair
pald03430

Other DBs
GO: 0006298
Organism
Pseudomonas alloputida [GN:pald]
Gene
LU682_023035  mutS; DNA mismatch repair protein MutS [KO:K03555]
LU682_026695  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
LU682_029345  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
LU682_024560  sbcB; exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
LU682_005450  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
LU682_002695  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
LU682_023495  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
LU682_023905  single-stranded DNA-binding protein [KO:K03111]
LU682_002470  single-stranded DNA-binding protein [KO:K03111]
LU682_010375  single-stranded DNA-binding protein [KO:K03111]
LU682_018480  single-stranded DNA-binding protein [KO:K03111]
LU682_023125  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
LU682_000010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
LU682_008745  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
LU682_026165  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
LU682_021230  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
LU682_026025  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
LU682_001705  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
LU682_009400  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
LU682_005210  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
LU682_027065  ligB; NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
LU682_008640  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
LU682_010875  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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