KEGG   PATHWAY: palk00020
Entry
palk00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas alkylphenolica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
palk00020  Citrate cycle (TCA cycle)
palk00020

Module
palk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:palk00020]
palk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:palk00020]
palk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:palk00020]
palk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:palk00020]
palk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:palk00020]
Other DBs
GO: 0006099
Organism
Pseudomonas alkylphenolica [GN:palk]
Gene
PSAKL28_36150  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
PSAKL28_16110  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PSAKL28_17880  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PSAKL28_25850  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PSAKL28_34340  isocitrate dehydrogenase, NADP-dependent, prokaryotic type [KO:K00031] [EC:1.1.1.42]
PSAKL28_34350  isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
PSAKL28_36100  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PSAKL28_36090  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
PSAKL28_36080  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSAKL28_52340  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSAKL28_37990  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSAKL28_36060  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
PSAKL28_36070  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
PSAKL28_01350  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
PSAKL28_36120  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PSAKL28_36110  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PSAKL28_36140  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PSAKL28_36130  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
PSAKL28_09800  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PSAKL28_13640  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PSAKL28_42960  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PSAKL28_22680  malate/lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PSAKL28_45620  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PSAKL28_16190  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PSAKL28_52120  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
PSAKL28_52110  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
PSAKL28_02710  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PSAKL28_08970  2-oxoacid dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
PSAKL28_03720  pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
PSAKL28_03710  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
palk00010  Glycolysis / Gluconeogenesis
palk00053  Ascorbate and aldarate metabolism
palk00061  Fatty acid biosynthesis
palk00071  Fatty acid degradation
palk00190  Oxidative phosphorylation
palk00220  Arginine biosynthesis
palk00250  Alanine, aspartate and glutamate metabolism
palk00280  Valine, leucine and isoleucine degradation
palk00350  Tyrosine metabolism
palk00470  D-Amino acid metabolism
palk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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