KEGG   PATHWAY: paln00020
Entry
paln00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudoalteromonas aliena
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
paln00020  Citrate cycle (TCA cycle)
paln00020

Module
paln_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:paln00020]
paln_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:paln00020]
paln_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:paln00020]
paln_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:paln00020]
paln_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:paln00020]
Other DBs
GO: 0006099
Organism
Pseudoalteromonas aliena [GN:paln]
Gene
B0W48_17455  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
B0W48_09280  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
B0W48_09445  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
B0W48_17750  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B0W48_15595  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
B0W48_01155  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
B0W48_17430  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
B0W48_17425  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
B0W48_10580  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B0W48_12280  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B0W48_17415  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
B0W48_17420  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
B0W48_17440  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B0W48_17435  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
B0W48_17450  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
B0W48_17445  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
B0W48_15120  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
B0W48_08475  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
B0W48_10625  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B0W48_08900  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
B0W48_10570  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
B0W48_10575  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
paln00010  Glycolysis / Gluconeogenesis
paln00053  Ascorbate and aldarate metabolism
paln00061  Fatty acid biosynthesis
paln00071  Fatty acid degradation
paln00190  Oxidative phosphorylation
paln00220  Arginine biosynthesis
paln00250  Alanine, aspartate and glutamate metabolism
paln00280  Valine, leucine and isoleucine degradation
paln00350  Tyrosine metabolism
paln00470  D-Amino acid metabolism
paln00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system