KEGG   PATHWAY: pamo00020
Entry
pamo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Profundibacter amoris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pamo00020  Citrate cycle (TCA cycle)
pamo00020

Module
pamo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pamo00020]
pamo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pamo00020]
pamo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pamo00020]
pamo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pamo00020]
pamo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pamo00020]
Other DBs
GO: 0006099
Organism
Profundibacter amoris [GN:pamo]
Gene
BAR1_09945  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BAR1_03750  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BAR1_06140  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
BAR1_09290  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BAR1_14440  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BAR1_14445  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
BAR1_10145  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BAR1_14460  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BAR1_14430  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BAR1_14415  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BAR1_14360  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BAR1_14345  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BAR1_14370  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BAR1_14365  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BAR1_06755  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BAR1_14405  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BAR1_10375  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BAR1_16235  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BAR1_14895  transketolase [KO:K00163] [EC:1.2.4.1]
BAR1_06415  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BAR1_06410  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BAR1_06405  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
BAR1_04500  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pamo00010  Glycolysis / Gluconeogenesis
pamo00053  Ascorbate and aldarate metabolism
pamo00061  Fatty acid biosynthesis
pamo00071  Fatty acid degradation
pamo00190  Oxidative phosphorylation
pamo00220  Arginine biosynthesis
pamo00250  Alanine, aspartate and glutamate metabolism
pamo00280  Valine, leucine and isoleucine degradation
pamo00350  Tyrosine metabolism
pamo00470  D-Amino acid metabolism
pamo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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