KEGG   PATHWAY: pant00020
Entry
pant00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pantoea sp. PSNIH1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pant00020  Citrate cycle (TCA cycle)
pant00020

Module
pant_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pant00020]
pant_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pant00020]
pant_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pant00020]
pant_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pant00020]
pant_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pant00020]
Other DBs
GO: 0006099
Organism
Pantoea sp. PSNIH1 [GN:pant]
Gene
PSNIH1_10325  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
PSNIH1_14025  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PSNIH1_08525  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PSNIH1_12080  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PSNIH1_10350  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
PSNIH1_10355  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
PSNIH1_08520  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSNIH1_10365  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
PSNIH1_10360  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
PSNIH1_10340  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
PSNIH1_10345  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
PSNIH1_10330  succinate dehydrogenase [KO:K00241]
PSNIH1_10335  sdhD; succinate dehydrogenase [KO:K00242]
PSNIH1_12195  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PSNIH1_12900  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PSNIH1_04030  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PSNIH1_05010  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PSNIH1_p00895  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PSNIH1_04685  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PSNIH1_08510  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
PSNIH1_08515  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pant00010  Glycolysis / Gluconeogenesis
pant00053  Ascorbate and aldarate metabolism
pant00061  Fatty acid biosynthesis
pant00071  Fatty acid degradation
pant00190  Oxidative phosphorylation
pant00220  Arginine biosynthesis
pant00250  Alanine, aspartate and glutamate metabolism
pant00280  Valine, leucine and isoleucine degradation
pant00350  Tyrosine metabolism
pant00470  D-Amino acid metabolism
pant00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system