KEGG   PATHWAY: patr00020
Entry
patr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pectobacterium atrosepticum JG10-08
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
patr00020  Citrate cycle (TCA cycle)
patr00020

Module
patr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:patr00020]
patr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:patr00020]
patr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:patr00020]
patr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:patr00020]
patr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:patr00020]
Other DBs
GO: 0006099
Organism
Pectobacterium atrosepticum JG10-08 [GN:patr]
Gene
EV46_20510  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
EV46_06855  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
EV46_09330  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EV46_18525  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EV46_11750  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EV46_06880  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
EV46_06885  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
EV46_18565  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EV46_06895  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
EV46_06890  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
EV46_06870  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
EV46_06875  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
EV46_06860  succinate dehydrogenase [KO:K00241]
EV46_06865  sdhD; succinate dehydrogenase [KO:K00242]
EV46_19475  fumarate reductase [KO:K00244] [EC:1.3.5.1]
EV46_19480  fumarate reductase [KO:K00245] [EC:1.3.5.1]
EV46_19485  fumarate reductase [KO:K00246]
EV46_19490  fumarate reductase [KO:K00247]
EV46_04170  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EV46_10865  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EV46_02950  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EV46_15240  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
EV46_20430  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EV46_18575  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
EV46_18570  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
EV46_03640  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
EV46_14595  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
patr00010  Glycolysis / Gluconeogenesis
patr00053  Ascorbate and aldarate metabolism
patr00061  Fatty acid biosynthesis
patr00071  Fatty acid degradation
patr00190  Oxidative phosphorylation
patr00220  Arginine biosynthesis
patr00250  Alanine, aspartate and glutamate metabolism
patr00280  Valine, leucine and isoleucine degradation
patr00350  Tyrosine metabolism
patr00470  D-Amino acid metabolism
patr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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