KEGG   PATHWAY: pbae00020
Entry
pbae00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Roseinatronobacter sp. S2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pbae00020  Citrate cycle (TCA cycle)
pbae00020

Module
pbae_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pbae00020]
pbae_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pbae00020]
pbae_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pbae00020]
pbae_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pbae00020]
pbae_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pbae00020]
Other DBs
GO: 0006099
Organism
Roseinatronobacter sp. S2 [GN:pbae]
Gene
P8S53_06805  citrate synthase [KO:K01647] [EC:2.3.3.1]
P8S53_08010  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
P8S53_14300  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
P8S53_09075  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
P8S53_09080  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
P8S53_07675  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
P8S53_09095  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
P8S53_18220  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
P8S53_09065  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
P8S53_09055  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
P8S53_11225  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
P8S53_11235  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
P8S53_11215  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
P8S53_11220  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
P8S53_07160  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
P8S53_09050  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
P8S53_13560  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
P8S53_07515  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
P8S53_18210  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
P8S53_08820  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
P8S53_08815  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
P8S53_08810  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
P8S53_18215  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pbae00010  Glycolysis / Gluconeogenesis
pbae00053  Ascorbate and aldarate metabolism
pbae00061  Fatty acid biosynthesis
pbae00071  Fatty acid degradation
pbae00190  Oxidative phosphorylation
pbae00220  Arginine biosynthesis
pbae00250  Alanine, aspartate and glutamate metabolism
pbae00280  Valine, leucine and isoleucine degradation
pbae00350  Tyrosine metabolism
pbae00470  D-Amino acid metabolism
pbae00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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