KEGG   PATHWAY: pcac00020
Entry
pcac00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pectobacterium cacticida
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcac00020  Citrate cycle (TCA cycle)
pcac00020

Module
pcac_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pcac00020]
pcac_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcac00020]
pcac_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcac00020]
pcac_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcac00020]
pcac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcac00020]
Other DBs
GO: 0006099
Organism
Pectobacterium cacticida [GN:pcac]
Gene
OI450_17035  citrate synthase [KO:K01647] [EC:2.3.3.1]
OI450_12410  citrate synthase [KO:K01647] [EC:2.3.3.1]
OI450_08605  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
OI450_14800  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
OI450_10230  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OI450_12380  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
OI450_12375  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
OI450_14840  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OI450_12365  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
OI450_12370  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
OI450_12390  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OI450_12385  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
OI450_12400  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
OI450_12395  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
OI450_16490  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
OI450_16495  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
OI450_16500  frdC; fumarate reductase subunit FrdC [KO:K00246]
OI450_16505  frdD; fumarate reductase subunit FrdD [KO:K00247]
OI450_15860  fumA; class I fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
OI450_09510  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
OI450_03235  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OI450_12085  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
OI450_17005  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
OI450_14850  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
OI450_14845  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
OI450_02840  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
OI450_10540  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcac00010  Glycolysis / Gluconeogenesis
pcac00053  Ascorbate and aldarate metabolism
pcac00061  Fatty acid biosynthesis
pcac00071  Fatty acid degradation
pcac00190  Oxidative phosphorylation
pcac00220  Arginine biosynthesis
pcac00250  Alanine, aspartate and glutamate metabolism
pcac00280  Valine, leucine and isoleucine degradation
pcac00350  Tyrosine metabolism
pcac00470  D-Amino acid metabolism
pcac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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