KEGG   PATHWAY: pcai00020
Entry
pcai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pasteurella canis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcai00020  Citrate cycle (TCA cycle)
pcai00020

Module
pcai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pcai00020]
pcai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcai00020]
pcai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcai00020]
pcai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcai00020]
pcai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcai00020]
Other DBs
GO: 0006099
Organism
Pasteurella canis [GN:pcai]
Gene
K7G93_001069  citrate synthase [KO:K01647] [EC:2.3.3.1]
K7G93_000246  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
K7G93_001801  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K7G93_001068  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K7G93_001067  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
K7G93_000353  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K7G93_001064  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K7G93_001065  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K7G93_001096  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
K7G93_001097  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
K7G93_001098  frdC; fumarate reductase subunit FrdC [KO:K00246]
K7G93_001099  frdD; fumarate reductase subunit FrdD [KO:K00247]
K7G93_000983  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K7G93_000631  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K7G93_001639  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
K7G93_000351  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
K7G93_000352  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcai00010  Glycolysis / Gluconeogenesis
pcai00053  Ascorbate and aldarate metabolism
pcai00061  Fatty acid biosynthesis
pcai00071  Fatty acid degradation
pcai00190  Oxidative phosphorylation
pcai00220  Arginine biosynthesis
pcai00250  Alanine, aspartate and glutamate metabolism
pcai00280  Valine, leucine and isoleucine degradation
pcai00350  Tyrosine metabolism
pcai00470  D-Amino acid metabolism
pcai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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