KEGG   PATHWAY: pcc00020
Entry
pcc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pectobacterium carotovorum subsp. carotovorum PCC21
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcc00020  Citrate cycle (TCA cycle)
pcc00020

Module
pcc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pcc00020]
pcc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcc00020]
pcc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcc00020]
pcc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcc00020]
pcc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcc00020]
Other DBs
GO: 0006099
Organism
Pectobacterium carotovorum subsp. carotovorum PCC21 [GN:pcc]
Gene
PCC21_012640  citrate synthase I [KO:K01647] [EC:2.3.3.1]
PCC21_039040  citrate synthase I [KO:K01647] [EC:2.3.3.1]
PCC21_024780  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PCC21_035470  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PCC21_019330  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
PCC21_012690  alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
PCC21_012700  dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
PCC21_035580  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PCC21_012720  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
PCC21_012710  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
PCC21_012670  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PCC21_012680  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PCC21_012650  succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
PCC21_012660  succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
PCC21_037470  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
PCC21_037480  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
PCC21_037490  fumarate reductase subunit C [KO:K00246]
PCC21_037500  fumarate reductase subunit D [KO:K00247]
PCC21_008090  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
PCC21_020970  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PCC21_005780  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PCC21_028980  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PCC21_038880  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PCC21_035600  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
PCC21_035590  pyruvate dehydrogenase dihydrolipoyltransacetylase subunit [KO:K00627] [EC:2.3.1.12]
PCC21_007320  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcc00010  Glycolysis / Gluconeogenesis
pcc00053  Ascorbate and aldarate metabolism
pcc00061  Fatty acid biosynthesis
pcc00071  Fatty acid degradation
pcc00190  Oxidative phosphorylation
pcc00220  Arginine biosynthesis
pcc00250  Alanine, aspartate and glutamate metabolism
pcc00280  Valine, leucine and isoleucine degradation
pcc00350  Tyrosine metabolism
pcc00470  D-Amino acid metabolism
pcc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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