KEGG   PATHWAY: pchp03430
Entry
pchp03430                   Pathway                                
Name
Mismatch repair - Pseudomonas chlororaphis subsp. piscium
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
pchp03430  Mismatch repair
pchp03430

Other DBs
GO: 0006298
Organism
Pseudomonas chlororaphis subsp. piscium [GN:pchp]
Gene
C4K32_1280  DNA mismatch repair protein MutS [KO:K03555]
C4K32_0573  DNA mismatch repair protein MutL [KO:K03572]
C4K32_6232  ATP-dependent DNA helicase UvrD/PcrA [KO:K03657] [EC:5.6.2.4]
C4K32_4892  Exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
C4K32_5053  Exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
C4K32_5573  Exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
C4K32_1183  Single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
C4K32_5609  Single-stranded DNA-binding protein [KO:K03111]
C4K32_1261  DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
C4K32_0002  DNA polymerase III beta subunit [KO:K02338] [EC:2.7.7.7]
C4K32_1998  DNA polymerase III, gamma-tau subunit [KO:K02343] [EC:2.7.7.7]
C4K32_5519  DNA polymerase III delta subunit [KO:K02340] [EC:2.7.7.7]
C4K32_1887  DNA polymerase III delta prime subunit [KO:K02341] [EC:2.7.7.7]
C4K32_2807  DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
C4K32_5490  DEDDh DNA polymerase III 3'-5' exonuclease domain [KO:K02342] [EC:2.7.7.7]
C4K32_5793  Exonuclease [KO:K02342] [EC:2.7.7.7]
C4K32_1134  DNA polymerase III chi subunit [KO:K02339] [EC:2.7.7.7]
C4K32_1989  DNA ligase (NAD(+)) [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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