KEGG   PATHWAY: pcia00020
Entry
pcia00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Psychrobacter cibarius
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcia00020  Citrate cycle (TCA cycle)
pcia00020

Module
pcia_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcia00020]
pcia_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcia00020]
pcia_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcia00020]
pcia_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcia00020]
Other DBs
GO: 0006099
Organism
Psychrobacter cibarius [GN:pcia]
Gene
Q6344_00630  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
Q6344_13865  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
Q6344_09615  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Q6344_01865  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Q6344_01870  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Q6344_00655  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Q6344_00660  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
Q6344_00665  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q6344_09515  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q6344_00675  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
Q6344_00670  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
Q6344_00645  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Q6344_00650  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Q6344_00635  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Q6344_00640  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Q6344_11160  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Q6344_12060  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Q6344_05390  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
Q6344_05395  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcia00010  Glycolysis / Gluconeogenesis
pcia00053  Ascorbate and aldarate metabolism
pcia00061  Fatty acid biosynthesis
pcia00071  Fatty acid degradation
pcia00190  Oxidative phosphorylation
pcia00220  Arginine biosynthesis
pcia00250  Alanine, aspartate and glutamate metabolism
pcia00280  Valine, leucine and isoleucine degradation
pcia00350  Tyrosine metabolism
pcia00470  D-Amino acid metabolism
pcia00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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