KEGG   PATHWAY: pdg00630
Entry
pdg00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Planococcus donghaensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
pdg00630  Glyoxylate and dicarboxylate metabolism
pdg00630

Module
pdg_M00012  Glyoxylate cycle [PATH:pdg00630]
pdg_M00621  Glycine cleavage system [PATH:pdg00630]
Other DBs
GO: 0046487 0043648
Organism
Planococcus donghaensis [GN:pdg]
Gene
BCM40_07435  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
BCM40_02635  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
BCM40_10060  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
BCM40_10120  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
BCM40_04315  malate synthase A [KO:K01638] [EC:2.3.3.9]
BCM40_03735  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BCM40_09915  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BCM40_15240  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BCM40_16170  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BCM40_09925  citrate synthase [KO:K01647] [EC:2.3.3.1]
BCM40_08530  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BCM40_06075  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BCM40_03060  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BCM40_09910  enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
BCM40_08660  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
BCM40_08655  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
BCM40_08680  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
BCM40_08685  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
BCM40_14385  catalase [KO:K03781] [EC:1.11.1.6]
BCM40_02490  catalase HPII [KO:K03781] [EC:1.11.1.6]
BCM40_02650  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
BCM40_06005  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
BCM40_03180  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BCM40_08840  glycine dehydrogenase (aminomethyl-transferring) [KO:K00282] [EC:1.4.4.2]
BCM40_08835  glycine dehydrogenase (aminomethyl-transferring) [KO:K00283] [EC:1.4.4.2]
BCM40_08845  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
BCM40_05110  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCM40_08705  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCM40_10850  glycine cleavage system protein H [KO:K02437]
BCM40_00865  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
BCM40_12585  glycerate kinase [KO:K00865] [EC:2.7.1.165]
BCM40_12790  glycerate kinase [KO:K00865] [EC:2.7.1.165]
BCM40_14075  aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
BCM40_12050  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BCM40_07450  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
BCM40_11330  arylformamidase [KO:K07130] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pdg00010  Glycolysis / Gluconeogenesis
pdg00020  Citrate cycle (TCA cycle)
pdg00030  Pentose phosphate pathway
pdg00053  Ascorbate and aldarate metabolism
pdg00071  Fatty acid degradation
pdg00230  Purine metabolism
pdg00250  Alanine, aspartate and glutamate metabolism
pdg00260  Glycine, serine and threonine metabolism
pdg00620  Pyruvate metabolism
pdg00710  Carbon fixation by Calvin cycle
pdg00750  Vitamin B6 metabolism
pdg00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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