KEGG   PATHWAY: pdic03008
Entry
pdic03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Phyllostomus discolor (pale spear-nosed bat)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
pdic03008  Ribosome biogenesis in eukaryotes
pdic03008

Organism
Phyllostomus discolor (pale spear-nosed bat) [GN:pdic]
Gene
114494606  CSNK2B; casein kinase II subunit beta [KO:K03115]
114488132  CSNK2A2; casein kinase II subunit alpha' isoform X1 [KO:K03097] [EC:2.7.11.1]
114505943  CSNK2A1; casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
114498277  NOL6; nucleolar protein 6 [KO:K14544]
114513379  RRP7A; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
114499804  WDR43; WD repeat-containing protein 43 [KO:K14546]
114515498  UTP4; U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
114509177  UTP15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
114512282  HEATR1; HEAT repeat-containing protein 1 [KO:K14550]
114494559  WDR75; WD repeat-containing protein 75 [KO:K14552]
114503463  UTP18; U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
114499486  WDR36; WD repeat-containing protein 36 [KO:K14554]
114504061  TBL3; transducin beta-like protein 3 isoform X1 [KO:K14555]
114489058  WDR3; WD repeat-containing protein 3 [KO:K14556]
114504049  UTP6; U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
114490452  PWP2; periodic tryptophan protein 2 homolog [KO:K14558]
114488584  MPHOSPH10; U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
114492818  IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
114508636  IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 isoform X2 [KO:K14561]
114510294  TCOF1; treacle protein isoform X1 [KO:K14562]
114509610  FBLL1; rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 [KO:K14563] [EC:2.1.1.-]
114511587  FBL; rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
114506212  NOP56; nucleolar protein 56 [KO:K14564]
114494397  NOP58; nucleolar protein 58 isoform X1 [KO:K14565]
114513391  SNU13; NHP2-like protein 1 [KO:K12845]
114504971  DKC1; H/ACA ribonucleoprotein complex subunit DKC1 isoform X1 [KO:K11131] [EC:5.4.99.-]
114509705  NHP2; H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
114492563  GAR1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
114490285  NOP10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
114491812  FCF1; rRNA-processing protein FCF1 homolog [KO:K14566]
114504676  UTP14A; U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 [KO:K14567]
114504019  DROSHA; ribonuclease 3 isoform X1 [KO:K03685] [EC:3.1.26.3]
114513687  EMG1; ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
114496044  BMS1; ribosome biogenesis protein BMS1 homolog isoform X2 [KO:K14569]
114500091  NAT10; RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
114508047  RCL1; RNA 3'-terminal phosphate cyclase-like protein isoform X1 [KO:K11108]
114514675  POP1; ribonucleases P/MRP protein subunit POP1 isoform X2 [KO:K01164] [EC:3.1.26.5]
114491747  RPP38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
114490139  POP4; ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
114509083  POP5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
114498406  RPP25L; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
114493152  RPP25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
114498829  ribonuclease P protein subunit p20-like [KO:K14527] [EC:3.1.26.5]
114507323  POP7; ribonuclease P protein subunit p20 isoform X1 [KO:K14527] [EC:3.1.26.5]
114496521  RPP30; ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
114496609  RPP40; ribonuclease P protein subunit p40 isoform X1 [KO:K14530] [EC:3.1.26.5]
114504363  REXO5; LOW QUALITY PROTEIN: RNA exonuclease 5 [KO:K14570] [EC:3.1.-.-]
114502453  REXO1; RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
114500189  REXO2; oligoribonuclease, mitochondrial isoform X1 [KO:K13288] [EC:3.1.-.-]
114490447  XRN1; 5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
114506228  XRN2; 5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
114491617  GTPBP4; nucleolar GTP-binding protein 1 [KO:K06943]
114497408  GNL2; nucleolar GTP-binding protein 2 [KO:K14537]
114504965  GNL3L; guanine nucleotide-binding protein-like 3-like protein isoform X1 [KO:K14538]
114501962  GNL3; guanine nucleotide-binding protein-like 3 [KO:K14538]
114512338  NVL; nuclear valosin-containing protein-like isoform X2 [KO:K14571]
114494361  MDN1; midasin isoform X1 [KO:K14572]
114507613  RBM28; RNA-binding protein 28 [KO:K14573]
114488102  NOB1; RNA-binding protein NOB1 [KO:K11883]
114489725  RAN; GTP-binding nuclear protein Ran [KO:K07936]
114499870  XPO1; exportin-1 isoform X1 [KO:K14290]
114490811  NMD3; 60S ribosomal export protein NMD3 [KO:K07562]
114504877  NXF3; LOW QUALITY PROTEIN: nuclear RNA export factor 3 [KO:K14284]
114499314  NXF1; nuclear RNA export factor 1 [KO:K14284]
114506411  NXT1; NTF2-related export protein 1 [KO:K14285]
114506930  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
114504042  SBDS; ribosome maturation protein SBDS [KO:K14574]
114488518  EFL1; elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
114491041  LSG1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
114503572  SPATA5; ATPase family protein 2 homolog [KO:K14575]
114496190  LOW QUALITY PROTEIN: adenylate kinase isoenzyme 6-like [KO:K18532] [EC:2.7.4.3]
114491502  AK6; adenylate kinase isoenzyme 6 isoform X2 [KO:K18532] [EC:2.7.4.3]
114497496  RIOK1; serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
114508563  RIOK2; serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
114512503  18S ribosomal RNA [KO:K01979]
114512504  28S ribosomal RNA [KO:K01982]
114504473  small nucleolar RNA U3 [KO:K14483]
114508298  small nucleolar RNA U3 [KO:K14483]
114493505  small nucleolar RNA U3 [KO:K14483]
114502234  small nucleolar RNA U3 [KO:K14483]
114498162  small nucleolar RNA U3 [KO:K14483]
114514326  small nucleolar RNA U3 [KO:K14483]
114514920  small nucleolar RNA U3 [KO:K14483]
114495730  small nucleolar RNA U3 [KO:K14483]
114495733  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
pdic03010  Ribosome
KO pathway
ko03008   
LinkDB

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