KEGG   PATHWAY: pdio00240
Entry
pdio00240                   Pathway                                
Name
Pyrimidine metabolism - Paraburkholderia dioscoreae
Class
Metabolism; Nucleotide metabolism
Pathway map
pdio00240  Pyrimidine metabolism
pdio00240

Module
pdio_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:pdio00240]
pdio_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pdio00240]
pdio_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pdio00240]
pdio_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pdio00240]
Other DBs
GO: 0006220 0006213
Organism
Paraburkholderia dioscoreae [GN:pdio]
Gene
PDMSB3_3168  carB; carbamoyl-phosphate synthase, large subunit [KO:K01955] [EC:6.3.5.5]
PDMSB3_3169  carA; carbamoyl-phosphate synthase, small chain [KO:K01956] [EC:6.3.5.5]
PDMSB3_1005.1  Aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
PDMSB3_0748  pyrB; aspartate carbamoyltransferase, catalytic subunit [KO:K00609] [EC:2.1.3.2]
PDMSB3_3768  pyrC; dihydro-orotase [KO:K01465] [EC:3.5.2.3]
PDMSB3_2058.1  Putative amidohydrolase [KO:K01465] [EC:3.5.2.3]
PDMSB3_0749  pyrC; Dihydroorotase-like protein [KO:K01465] [EC:3.5.2.3]
PDMSB3_0225  pyrD; Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit [KO:K17828] [EC:1.3.1.14]
PDMSB3_0224  2-polyprenylphenol hydroxylase-like oxidoreductase [KO:K02823]
PDMSB3_1827  pyrD; dihydro-orotate oxidase, FMN-linked [KO:K00254] [EC:1.3.5.2]
PDMSB3_4123  pyrE; Orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
PDMSB3_3822  pyrF; Orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
PDMSB3_2591  pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22]
PDMSB3_2828  ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) [KO:K00940] [EC:2.7.4.6]
PDMSB3_1265  yhdE; putative septum formation protein [KO:K06287] [EC:3.6.1.-]
PDMSB3_2941  ygjP; putative metal dependent hydrolase [KO:K07043] [EC:3.6.1.-]
PDMSB3_2847  pyrG; CTP synthetase [KO:K01937] [EC:6.3.4.2]
PDMSB3_3307  cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.25]
PDMSB3_0480  5''-nucleotidase [KO:K01081] [EC:3.1.3.5]
PDMSB3_1944  surE; broad specificity 5'(3')-nucleotidase and polyphosphatase [KO:K03787] [EC:3.1.3.5 3.1.3.6]
PDMSB3_1272  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
PDMSB3_0747  pyrR; Pyrimidine operon regulatory protein / Uracil phosphoribosyltransferase [KO:K02825] [EC:2.4.2.9]
PDMSB3_2648.1  cdd; Cytidine deaminase [KO:K01489] [EC:3.5.4.5]
PDMSB3_2887  codA; Cytosine deaminase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
PDMSB3_0899  dcd; deoxycytidine triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
PDMSB3_3854  nrdA; ribonucleoside diphosphate reductase, alpha subunit [KO:K00525] [EC:1.17.4.1]
PDMSB3_1384.1  Ribonucleotide reductase of class II (coenzyme B12-dependent) [KO:K00525] [EC:1.17.4.1]
PDMSB3_3853  nrdB; Ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
PDMSB3_2064  tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
PDMSB3_3560  dut; deoxyuridinetriphosphatase [KO:K01520] [EC:3.6.1.23]
PDMSB3_3262  thyA; Thymidylate synthase [KO:K00560] [EC:2.1.1.45]
PDMSB3_3006  NADPH-dependent glutamate synthase beta chain-like oxidoreductase [KO:K17722] [EC:1.3.1.1]
PDMSB3_3005  yeiA; putative oxidoreductase subunit [KO:K17723] [EC:1.3.1.1]
PDMSB3_3003  dht; D-hydantoinase/dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
PDMSB3_0524.1  hyuC; N-carbamoyl-L-amino-acid hydrolase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
PDMSB3_2854.1  Amidase, hydantoinase/carbamoylase family [KO:K06016] [EC:3.5.1.6 3.5.1.87]
PDMSB3_3007  hyuC; N-carbamoyl-L-amino-acid hydrolase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
PDMSB3_0624  ydfG; L-allo-threonine dehydrogenase, NAD(P)-binding [KO:K16066] [EC:1.1.1.381 1.1.1.-]
PDMSB3_1203.1  rutE; oxidoreductase subunit of the alternative pyrimidine degradation pathway [KO:K09019] [EC:1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
pdio00030  Pentose phosphate pathway
pdio00220  Arginine biosynthesis
pdio00250  Alanine, aspartate and glutamate metabolism
pdio00280  Valine, leucine and isoleucine degradation
pdio00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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