KEGG   PATHWAY: pect00020
Entry
pect00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Phaeomarinobacter ectocarpi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pect00020  Citrate cycle (TCA cycle)
pect00020

Module
pect_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pect00020]
pect_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pect00020]
pect_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pect00020]
pect_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pect00020]
pect_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pect00020]
Other DBs
GO: 0006099
Organism
Candidatus Phaeomarinobacter ectocarpi [GN:pect]
Gene
BN1012_Phect2797  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
BN1012_Phect892  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BN1012_Phect1328  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BN1012_Phect274  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BN1012_Phect1136  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BN1012_Phect1256  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BN1012_Phect1255  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BN1012_Phect2845  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
BN1012_Phect1253  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
BN1012_Phect1257  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
BN1012_Phect1258  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
BN1012_Phect1276  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BN1012_Phect1274  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BN1012_Phect1278  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
BN1012_Phect1277  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BN1012_Phect442  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BN1012_Phect1260  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BN1012_Phect2102  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BN1012_Phect1864  Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) [KO:K01610] [EC:4.1.1.49]
BN1012_Phect2841  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
BN1012_Phect2842  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
BN1012_Phect2843  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pect00010  Glycolysis / Gluconeogenesis
pect00053  Ascorbate and aldarate metabolism
pect00061  Fatty acid biosynthesis
pect00071  Fatty acid degradation
pect00190  Oxidative phosphorylation
pect00220  Arginine biosynthesis
pect00250  Alanine, aspartate and glutamate metabolism
pect00280  Valine, leucine and isoleucine degradation
pect00350  Tyrosine metabolism
pect00470  D-Amino acid metabolism
pect00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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