KEGG   PATHWAY: pey00020
Entry
pey00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pantoea eucalypti
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pey00020  Citrate cycle (TCA cycle)
pey00020

Module
pey_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pey00020]
pey_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pey00020]
pey_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pey00020]
pey_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pey00020]
pey_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pey00020]
Other DBs
GO: 0006099
Organism
Pantoea eucalypti [GN:pey]
Gene
EE896_13835  citrate synthase [KO:K01647] [EC:2.3.3.1]
EE896_08950  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
EE896_15815  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EE896_11935  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EE896_13810  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EE896_13805  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EE896_15845  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EE896_13795  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EE896_13800  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EE896_13820  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EE896_13815  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EE896_13830  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
EE896_13825  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
EE896_20675  class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EE896_10040  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EE896_02520  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EE896_20705  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
EE896_01100  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
EE896_01835  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EE896_15855  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EE896_15850  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pey00010  Glycolysis / Gluconeogenesis
pey00053  Ascorbate and aldarate metabolism
pey00061  Fatty acid biosynthesis
pey00071  Fatty acid degradation
pey00190  Oxidative phosphorylation
pey00220  Arginine biosynthesis
pey00250  Alanine, aspartate and glutamate metabolism
pey00280  Valine, leucine and isoleucine degradation
pey00350  Tyrosine metabolism
pey00470  D-Amino acid metabolism
pey00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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