KEGG   PATHWAY: pfer00630
Entry
pfer00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paludibaculum fermentans
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfer00630  Glyoxylate and dicarboxylate metabolism
pfer00630

Module
pfer_M00621  Glycine cleavage system [PATH:pfer00630]
pfer_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pfer00630]
Other DBs
GO: 0046487 0043648
Organism
Paludibaculum fermentans [GN:pfer]
Gene
IRI77_03735  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
IRI77_19525  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IRI77_03550  citrate synthase [KO:K01647] [EC:2.3.3.1]
IRI77_21865  citrate synthase [KO:K01647] [EC:2.3.3.1]
IRI77_01075  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
IRI77_07660  thiolase family protein [KO:K00626] [EC:2.3.1.9]
IRI77_22295  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
IRI77_05270  VOC family protein [KO:K05606] [EC:5.1.99.1]
IRI77_20005  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01965] [EC:6.4.1.3]
IRI77_20000  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
IRI77_05275  hypothetical protein [KO:K01847] [EC:5.4.99.2]
IRI77_05280  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
IRI77_23670  cobalamin B12-binding domain-containing protein [KO:K01849] [EC:5.4.99.2]
IRI77_23665  methylmalonyl-CoA mutase family protein [KO:K01848] [EC:5.4.99.2]
IRI77_18635  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
IRI77_10940  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
IRI77_10945  4Fe-4S dicluster domain-containing protein [KO:K11473] [EC:1.1.99.14]
IRI77_24330  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
IRI77_29140  hypothetical protein [KO:K00015] [EC:1.1.1.26]
IRI77_03660  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
IRI77_08675  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
IRI77_30240  haloacid dehalogenase-like hydrolase [KO:K01091] [EC:3.1.3.18]
IRI77_34015  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
IRI77_20545  gltB; glutamate synthase large subunit [KO:K00284] [EC:1.4.7.1]
IRI77_29090  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
IRI77_29095  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
IRI77_12350  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
IRI77_20615  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
IRI77_20610  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
IRI77_20625  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
IRI77_20940  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IRI77_00925  glycine cleavage system protein H [KO:K02437]
IRI77_20620  gcvH; glycine cleavage system protein GcvH [KO:K02437]
IRI77_01425  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
IRI77_16985  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
IRI77_31560  garR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
IRI77_20630  glycerate kinase [KO:K11529] [EC:2.7.1.165]
IRI77_36885  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
IRI77_06965  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
IRI77_16710  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
IRI77_34435  dihydrodipicolinate synthase family protein [KO:K18123] [EC:4.1.3.16]
IRI77_23650  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
IRI77_00930  4Fe-4S dicluster domain-containing protein [KO:K00124]
IRI77_06395  cyclase family protein [KO:K07130] [EC:3.5.1.9]
IRI77_14485  cyclase family protein [KO:K07130] [EC:3.5.1.9]
IRI77_23450  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
IRI77_13515  AMP-binding protein [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pfer00010  Glycolysis / Gluconeogenesis
pfer00020  Citrate cycle (TCA cycle)
pfer00030  Pentose phosphate pathway
pfer00053  Ascorbate and aldarate metabolism
pfer00071  Fatty acid degradation
pfer00230  Purine metabolism
pfer00250  Alanine, aspartate and glutamate metabolism
pfer00260  Glycine, serine and threonine metabolism
pfer00620  Pyruvate metabolism
pfer00710  Carbon fixation by Calvin cycle
pfer00750  Vitamin B6 metabolism
pfer00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system