KEGG   PATHWAY: pfre00020
Entry
pfre00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Propionibacterium freudenreichii subsp. freudenreichii DSM 20271
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfre00020  Citrate cycle (TCA cycle)
pfre00020

Module
pfre_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfre00020]
pfre_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfre00020]
pfre_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfre00020]
pfre_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfre00020]
Other DBs
GO: 0006099
Organism
Propionibacterium freudenreichii subsp. freudenreichii DSM 20271 [GN:pfre]
Gene
RM25_2325  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RM25_0125  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RM25_0933  Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
RM25_0649  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
RM25_1150  2-oxoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
RM25_1087  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RM25_0495  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RM25_0494  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RM25_0280  Succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
RM25_1351  Succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RM25_1247  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RM25_1350  Succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RM25_1246  Succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RM25_1352  Succinate dehydrogenase cytochrome B subunit, b558 family [KO:K00241]
RM25_1248  Succinate dehydrogenase cytochrome B subunit, b558 family [KO:K00241]
RM25_1547  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
RM25_0648  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RM25_1225  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
RM25_1510  Hypothetical protein [KO:K00627] [EC:2.3.1.12]
RM25_0186  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
RM25_0673  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfre00010  Glycolysis / Gluconeogenesis
pfre00053  Ascorbate and aldarate metabolism
pfre00061  Fatty acid biosynthesis
pfre00071  Fatty acid degradation
pfre00190  Oxidative phosphorylation
pfre00220  Arginine biosynthesis
pfre00250  Alanine, aspartate and glutamate metabolism
pfre00280  Valine, leucine and isoleucine degradation
pfre00350  Tyrosine metabolism
pfre00470  D-Amino acid metabolism
pfre00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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