KEGG   PATHWAY: pfri00630
Entry
pfri00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Peribacillus frigoritolerans
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfri00630  Glyoxylate and dicarboxylate metabolism
pfri00630

Module
pfri_M00012  Glyoxylate cycle [PATH:pfri00630]
pfri_M00621  Glycine cleavage system [PATH:pfri00630]
Other DBs
GO: 0046487 0043648
Organism
Peribacillus frigoritolerans [GN:pfri]
Gene
L8956_18800  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
L8956_19010  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
L8956_19070  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
L8956_18805  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
L8956_05395  malate synthase G [KO:K01638] [EC:2.3.3.9]
L8956_18775  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L8956_18785  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
L8956_11465  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
L8956_20285  thiolase family protein [KO:K00626] [EC:2.3.1.9]
L8956_20375  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
L8956_25800  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
L8956_04580  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
L8956_10190  thiolase family protein [KO:K00626] [EC:2.3.1.9]
L8956_10200  thiolase family protein [KO:K00626] [EC:2.3.1.9]
L8956_10355  thiolase family protein [KO:K00626] [EC:2.3.1.9]
L8956_16675  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
L8956_10650  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
L8956_16670  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
L8956_16720  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
L8956_16725  methylmalonyl-CoA mutase subunit beta [KO:K01847] [EC:5.4.99.2]
L8956_10655  acyl-CoA mutase large subunit family protein [KO:K01847] [EC:5.4.99.2]
L8956_10660  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
L8956_12635  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
L8956_18615  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
L8956_18610  (Fe-S)-binding protein [KO:K11473] [EC:1.1.99.14]
L8956_12630  (Fe-S)-binding protein [KO:K11473] [EC:1.1.99.14]
L8956_24070  katA; catalase KatA [KO:K03781] [EC:1.11.1.6]
L8956_25140  catalase [KO:K03781] [EC:1.11.1.6]
L8956_26345  catalase [KO:K03781] [EC:1.11.1.6]
L8956_05760  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
L8956_06800  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
L8956_20760  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
L8956_10720  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
L8956_08880  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
L8956_25660  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
L8956_16950  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
L8956_16945  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
L8956_16955  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
L8956_16745  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L8956_05730  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L8956_07595  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L8956_12530  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L8956_24620  gcvH; glycine cleavage system protein GcvH [KO:K02437]
L8956_12805  glycerate kinase [KO:K00865] [EC:2.7.1.165]
L8956_19450  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
L8956_13610  bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
L8956_13655  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
L8956_24895  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
L8956_12900  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
L8956_20045  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
L8956_06870  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
L8956_26150  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pfri00010  Glycolysis / Gluconeogenesis
pfri00020  Citrate cycle (TCA cycle)
pfri00030  Pentose phosphate pathway
pfri00053  Ascorbate and aldarate metabolism
pfri00071  Fatty acid degradation
pfri00230  Purine metabolism
pfri00250  Alanine, aspartate and glutamate metabolism
pfri00260  Glycine, serine and threonine metabolism
pfri00620  Pyruvate metabolism
pfri00710  Carbon fixation by Calvin cycle
pfri00750  Vitamin B6 metabolism
pfri00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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