KEGG   PATHWAY: phai00020
Entry
phai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Panicum hallii (Hall's panicgrass)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
phai00020  Citrate cycle (TCA cycle)
phai00020

Module
phai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:phai00020]
phai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:phai00020]
phai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:phai00020]
phai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:phai00020]
phai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:phai00020]
Other DBs
GO: 0006099
Organism
Panicum hallii (Hall's panicgrass) [GN:phai]
Gene
112890831  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
112878748  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
112894465  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
112887362  ATP-citrate synthase alpha chain protein 3 [KO:K01648] [EC:2.3.3.8]
112903433  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
112896475  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
112898997  putative aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
112875173  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
112881232  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
112884321  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
112900292  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
112893385  cytosolic isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
112875133  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
112901476  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
112893423  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
112881663  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
112899168  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
112899650  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
112892451  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
112899756  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
112878932  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
112894117  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
112895328  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
112885869  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
112886312  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
112880426  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
112877575  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
112872570  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
112897422  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
112896994  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
112879299  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
112899739  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
112878921  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
112887829  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
112877215  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
112900134  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
112875553  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
112883982  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
112897230  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
112886032  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
112886445  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
112876042  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
112879442  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
112875151  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
112875223  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
112902698  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
112890707  pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [KO:K00161] [EC:1.2.4.1]
112897218  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
112884848  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
112875568  pyruvate dehydrogenase E1 component subunit beta-4, chloroplastic [KO:K00162] [EC:1.2.4.1]
112880318  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial [KO:K00162] [EC:1.2.4.1]
112883001  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
112897286  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
112886437  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
112886915  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
112876719  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
phai00010  Glycolysis / Gluconeogenesis
phai00053  Ascorbate and aldarate metabolism
phai00061  Fatty acid biosynthesis
phai00062  Fatty acid elongation
phai00071  Fatty acid degradation
phai00190  Oxidative phosphorylation
phai00220  Arginine biosynthesis
phai00250  Alanine, aspartate and glutamate metabolism
phai00280  Valine, leucine and isoleucine degradation
phai00350  Tyrosine metabolism
phai00470  D-Amino acid metabolism
phai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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