PATHWAY: phei00470
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Entry
phei00470 Pathway
Name
D-Amino acid metabolism - Providencia heimbachae
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
phei00470
D-Amino acid metabolism
Ortholog table
Other DBs
GO:
0046416
Organism
Providencia heimbachae [GN:
phei
]
Gene
NCTC12003_01877
dadX; Alanine racemase, catabolic [KO:
K01775
] [EC:
5.1.1.1
]
NCTC12003_00540
alr_1; Alanine racemase, biosynthetic [KO:
K01775
] [EC:
5.1.1.1
]
NCTC12003_01607
dat; D-alanine aminotransferase [KO:
K00824
] [EC:
2.6.1.21
]
NCTC12003_01248
ddlB; D-alanine--D-alanine ligase B [KO:
K01921
] [EC:
6.3.2.4
]
NCTC12003_02086
ddlA; D-alanine--D-alanine ligase A [KO:
K01921
] [EC:
6.3.2.4
]
NCTC12003_02254
ygeA; putative racemase [KO:
K25316
] [EC:
5.1.1.10
]
NCTC12003_01837
alr_2; Alanine racemase [KO:
K25317
] [EC:
5.1.1.10
]
NCTC12003_00858
glsA; Thermolabile glutaminase [KO:
K01425
] [EC:
3.5.1.2
]
NCTC12003_02894
glsA1; Glutaminase 1 [KO:
K01425
] [EC:
3.5.1.2
]
NCTC12003_03819
murI; Glutamate racemase [KO:
K01776
] [EC:
5.1.1.3
]
NCTC12003_01244
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [KO:
K01925
] [EC:
6.3.2.9
]
NCTC12003_00849
Aspartate racemase [KO:
K01779
] [EC:
5.1.1.13
]
NCTC12003_02400
Aspartate racemase [KO:
K01779
] [EC:
5.1.1.13
]
NCTC12003_03480
dsdA; D-serine dehydratase [KO:
K01753
] [EC:
4.3.1.18
]
NCTC12003_03712
dapF; Diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
NCTC12003_00875
lysA; Diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
NCTC12003_02202
4-hydroxyproline epimerase [KO:
K12658
] [EC:
5.1.1.8
]
NCTC12003_02201
thiO_2; Glycine oxidase [KO:
K21060
] [EC:1.5.99.-]
NCTC12003_00977
thiO_1; Glycine oxidase [KO:
K00285
] [EC:
1.4.5.1
]
NCTC12003_01876
soxB_1; Sarcosine oxidase subunit beta [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
phei00010
Glycolysis / Gluconeogenesis
phei00020
Citrate cycle (TCA cycle)
phei00250
Alanine, aspartate and glutamate metabolism
phei00260
Glycine, serine and threonine metabolism
phei00270
Cysteine and methionine metabolism
phei00300
Lysine biosynthesis
phei00310
Lysine degradation
phei00330
Arginine and proline metabolism
phei00340
Histidine metabolism
phei00360
Phenylalanine metabolism
phei00550
Peptidoglycan biosynthesis
phei00620
Pyruvate metabolism
KO pathway
ko00470
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integrated database retrieval system
