KEGG   PATHWAY: pher00020
Entry
pher00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Prevotella herbatica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pher00020  Citrate cycle (TCA cycle)
pher00020

Module
pher_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pher00020]
pher_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pher00020]
Other DBs
GO: 0006099
Organism
Prevotella herbatica [GN:pher]
Gene
prwr041_24530  citrate synthase [KO:K01659] [EC:2.3.3.5]
prwr041_24540  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
prwr041_16830  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
prwr041_05590  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
prwr041_05600  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
prwr041_05610  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
prwr041_05580  ferredoxin [KO:K00176] [EC:1.2.7.3]
prwr041_11360  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
prwr041_11370  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
prwr041_11350  fumarate reductase [KO:K00241]
prwr041_17110  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
prwr041_08630  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
prwr041_05430  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
prwr041_10080  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
prwr041_22800  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pher00010  Glycolysis / Gluconeogenesis
pher00053  Ascorbate and aldarate metabolism
pher00061  Fatty acid biosynthesis
pher00190  Oxidative phosphorylation
pher00220  Arginine biosynthesis
pher00250  Alanine, aspartate and glutamate metabolism
pher00280  Valine, leucine and isoleucine degradation
pher00350  Tyrosine metabolism
pher00470  D-Amino acid metabolism
pher00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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