KEGG   PATHWAY: php00020
Entry
php00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Phaeobacter porticola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
php00020  Citrate cycle (TCA cycle)
php00020

Module
php_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:php00020]
php_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:php00020]
php_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:php00020]
php_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:php00020]
php_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:php00020]
Other DBs
GO: 0006099
Organism
Phaeobacter porticola [GN:php]
Gene
PhaeoP97_01705  gltA1; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
PhaeoP97_00619  gltA2; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
PhaeoP97_01920  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PhaeoP97_00669  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
PhaeoP97_02996  sucA; 2-oxoglutarate dehydrogenase E1 component SucA [KO:K00164] [EC:1.2.4.2]
PhaeoP97_02997  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
PhaeoP97_04070  lpdA; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
PhaeoP97_01760  lpdA2; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
PhaeoP97_03001  lpd2; dihydrolipoyl dehydrogenase 2 [KO:K00382] [EC:1.8.1.4]
PhaeoP97_02995  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
PhaeoP97_02993  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
PhaeoP97_02980  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PhaeoP97_02978  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PhaeoP97_02982  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
PhaeoP97_02981  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
PhaeoP97_01351  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
PhaeoP97_02991  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
PhaeoP97_00908  pyc; pyruvate carboxylase Pyc [KO:K01958] [EC:6.4.1.1]
PhaeoP97_00341  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PhaeoP97_01667  transketolase-like protein [KO:K00163] [EC:1.2.4.1]
PhaeoP97_01776  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PhaeoP97_01777  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
PhaeoP97_01778  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
php00010  Glycolysis / Gluconeogenesis
php00053  Ascorbate and aldarate metabolism
php00061  Fatty acid biosynthesis
php00071  Fatty acid degradation
php00190  Oxidative phosphorylation
php00220  Arginine biosynthesis
php00250  Alanine, aspartate and glutamate metabolism
php00280  Valine, leucine and isoleucine degradation
php00350  Tyrosine metabolism
php00470  D-Amino acid metabolism
php00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system