KEGG   PATHWAY: piu00020
Entry
piu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Polynucleobacter ibericus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
piu00020  Citrate cycle (TCA cycle)
piu00020

Module
piu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:piu00020]
piu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:piu00020]
piu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:piu00020]
piu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:piu00020]
piu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:piu00020]
Other DBs
GO: 0006099
Organism
Polynucleobacter ibericus [GN:piu]
Gene
AOC20_03725  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AOC20_04675  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AOC20_01970  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AOC20_04095  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AOC20_04100  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
AOC20_03590  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AOC20_04105  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AOC20_08485  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AOC20_08490  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AOC20_03710  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AOC20_03715  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AOC20_03700  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
AOC20_03705  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
AOC20_05635  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AOC20_03690  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AOC20_09675  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
AOC20_03580  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AOC20_03585  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
piu00010  Glycolysis / Gluconeogenesis
piu00061  Fatty acid biosynthesis
piu00071  Fatty acid degradation
piu00190  Oxidative phosphorylation
piu00220  Arginine biosynthesis
piu00250  Alanine, aspartate and glutamate metabolism
piu00280  Valine, leucine and isoleucine degradation
piu00350  Tyrosine metabolism
piu00470  D-Amino acid metabolism
piu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system