KEGG   PATHWAY: pkf00630
Entry
pkf00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia kirstenboschensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
pkf00630  Glyoxylate and dicarboxylate metabolism
pkf00630

Module
pkf_M00012  Glyoxylate cycle [PATH:pkf00630]
pkf_M00621  Glycine cleavage system [PATH:pkf00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia kirstenboschensis [GN:pkf]
Gene
RW095_25780  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RW095_19350  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
RW095_30820  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RW095_06480  malate synthase G [KO:K01638] [EC:2.3.3.9]
RW095_25760  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
RW095_27990  malate synthase G [KO:K01638] [EC:2.3.3.9]
RW095_15680  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RW095_15715  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
RW095_02060  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
RW095_31470  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
RW095_15655  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
RW095_08585  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RW095_27420  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RW095_27445  bktB; beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
RW095_27755  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
RW095_29505  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RW095_36165  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RW095_14555  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
RW095_08590  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
RW095_27425  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
RW095_05140  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
RW095_22760  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
RW095_05155  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
RW095_22000  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
RW095_03555  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
RW095_37540  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
RW095_37535  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
RW095_37530  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
RW095_04790  catalase [KO:K03781] [EC:1.11.1.6]
RW095_05705  catalase [KO:K03781] [EC:1.11.1.6]
RW095_37500  catalase [KO:K03781] [EC:1.11.1.6]
RW095_08825  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
RW095_06070  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
RW095_36100  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RW095_12305  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RW095_06440  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
RW095_23695  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
RW095_29050  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
RW095_22010  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
RW095_24585  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
RW095_18605  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RW095_23735  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
RW095_33125  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RW095_18725  ribulose-bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
RW095_18730  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
RW095_15330  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
RW095_25130  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
RW095_28400  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
RW095_14765  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RW095_14800  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RW095_22325  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RW095_37760  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RW095_34730  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
RW095_34720  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
RW095_25210  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RW095_29585  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RW095_34725  gcvH; glycine cleavage system protein GcvH [KO:K02437]
RW095_27090  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
RW095_27085  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
RW095_06075  glxR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RW095_27080  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RW095_09345  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RW095_27640  glycerate kinase [KO:K00865] [EC:2.7.1.165]
RW095_28045  aldA; aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
RW095_17810  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RW095_07325  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RW095_12325  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RW095_32490  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RW095_04430  oxalate decarboxylase family bicupin [KO:K01569] [EC:4.1.1.2]
RW095_05835  oxalate decarboxylase family bicupin [KO:K01569] [EC:4.1.1.2]
RW095_07470  cupin domain-containing protein [KO:K01569] [EC:4.1.1.2]
RW095_23255  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
RW095_07420  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
RW095_23260  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
RW095_07425  fdxH; formate dehydrogenase subunit beta [KO:K00124]
RW095_23265  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region domain-containing protein [KO:K00124]
RW095_07430  formate dehydrogenase subunit gamma [KO:K00127]
RW095_23270  NAD(P)H-dependent oxidoreductase subunit E [KO:K00127]
RW095_31720  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
RW095_22275  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RW095_36990  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RW095_13990  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RW095_30340  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
RW095_07980  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
RW095_07985  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
RW095_12095  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pkf00010  Glycolysis / Gluconeogenesis
pkf00020  Citrate cycle (TCA cycle)
pkf00030  Pentose phosphate pathway
pkf00053  Ascorbate and aldarate metabolism
pkf00071  Fatty acid degradation
pkf00230  Purine metabolism
pkf00250  Alanine, aspartate and glutamate metabolism
pkf00260  Glycine, serine and threonine metabolism
pkf00620  Pyruvate metabolism
pkf00710  Carbon fixation by Calvin cycle
pkf00750  Vitamin B6 metabolism
pkf00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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