KEGG   PATHWAY: pkm00020
Entry
pkm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas kermanshahensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pkm00020  Citrate cycle (TCA cycle)
pkm00020

Module
pkm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pkm00020]
pkm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pkm00020]
pkm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pkm00020]
pkm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pkm00020]
pkm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pkm00020]
Other DBs
GO: 0006099
Organism
Pseudomonas kermanshahensis [GN:pkm]
Gene
PZ739_19560  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PZ739_08110  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PZ739_09190  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PZ739_18750  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PZ739_18755  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PZ739_19535  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PZ739_19530  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PZ739_19525  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PZ739_20560  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PZ739_27620  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PZ739_19515  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PZ739_19520  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PZ739_00650  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
PZ739_19545  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PZ739_19540  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PZ739_19555  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PZ739_19550  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
PZ739_22915  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PZ739_04660  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PZ739_06675  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PZ739_03345  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PZ739_15350  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
PZ739_21455  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
PZ739_03825  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
PZ739_08145  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
PZ739_27515  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
PZ739_27510  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
PZ739_01235  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PZ739_01740  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
PZ739_01735  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
PZ739_02875  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pkm00010  Glycolysis / Gluconeogenesis
pkm00053  Ascorbate and aldarate metabolism
pkm00061  Fatty acid biosynthesis
pkm00071  Fatty acid degradation
pkm00190  Oxidative phosphorylation
pkm00220  Arginine biosynthesis
pkm00250  Alanine, aspartate and glutamate metabolism
pkm00280  Valine, leucine and isoleucine degradation
pkm00350  Tyrosine metabolism
pkm00470  D-Amino acid metabolism
pkm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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