KEGG   PATHWAY: pkm00630
Entry
pkm00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas kermanshahensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
pkm00630  Glyoxylate and dicarboxylate metabolism
pkm00630

Module
pkm_M00012  Glyoxylate cycle [PATH:pkm00630]
pkm_M00621  Glycine cleavage system [PATH:pkm00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas kermanshahensis [GN:pkm]
Gene
PZ739_19125  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
PZ739_20730  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
PZ739_24195  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
PZ739_08645  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
PZ739_01830  malate synthase G [KO:K01638] [EC:2.3.3.9]
PZ739_03345  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PZ739_19560  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PZ739_09170  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
PZ739_08110  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
PZ739_09190  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PZ739_23790  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PZ739_03020  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PZ739_08655  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
PZ739_10200  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
PZ739_11155  thiolase family protein [KO:K00626] [EC:2.3.1.9]
PZ739_11210  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
PZ739_11750  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PZ739_11770  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
PZ739_10840  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
PZ739_10835  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
PZ739_10830  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
PZ739_00445  katE; catalase HPII [KO:K03781] [EC:1.11.1.6]
PZ739_02505  catalase [KO:K03781] [EC:1.11.1.6]
PZ739_12660  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
PZ739_10505  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PZ739_23575  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
PZ739_03880  2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
PZ739_10855  NAD(P)-dependent oxidoreductase [KO:K00018] [EC:1.1.1.29]
PZ739_14365  NAD(P)-dependent oxidoreductase [KO:K00018] [EC:1.1.1.29]
PZ739_00235  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
PZ739_02145  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PZ739_07440  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
PZ739_16300  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
PZ739_18805  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
PZ739_20535  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
PZ739_21025  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
PZ739_25935  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
PZ739_26695  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
PZ739_26700  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
PZ739_27255  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
PZ739_13615  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
PZ739_16740  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PZ739_01640  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PZ739_03385  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PZ739_16745  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PZ739_26740  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PZ739_04880  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PZ739_16735  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
PZ739_26750  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
PZ739_04870  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
PZ739_19525  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PZ739_20560  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PZ739_27620  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PZ739_16750  gcvH; glycine cleavage system protein GcvH [KO:K02437]
PZ739_26745  gcvH; glycine cleavage system protein GcvH [KO:K02437]
PZ739_04885  gcvH; glycine cleavage system protein GcvH [KO:K02437]
PZ739_20050  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
PZ739_20055  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
PZ739_20060  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
PZ739_13850  glycerate kinase [KO:K00865] [EC:2.7.1.165]
PZ739_20065  glycerate kinase [KO:K11529] [EC:2.7.1.165]
PZ739_13825  aldA; aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
PZ739_10065  ttdA; L(+)-tartrate dehydratase subunit alpha [KO:K03779] [EC:4.2.1.32]
PZ739_10060  ttdB; L(+)-tartrate dehydratase subunit beta [KO:K03780] [EC:4.2.1.32]
PZ739_16590  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
PZ739_05060  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PZ739_08510  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
PZ739_02565  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
PZ739_08505  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
PZ739_13370  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
PZ739_02570  fdxH; formate dehydrogenase subunit beta [KO:K00124]
PZ739_08500  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region domain-containing protein [KO:K00124]
PZ739_13375  fdxH; formate dehydrogenase subunit beta [KO:K00124]
PZ739_02575  formate dehydrogenase subunit gamma [KO:K00127]
PZ739_08495  formate dehydrogenase subunit gamma [KO:K00127]
PZ739_13380  formate dehydrogenase subunit gamma [KO:K00127]
PZ739_17420  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PZ739_22875  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PZ739_01665  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PZ739_25850  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pkm00010  Glycolysis / Gluconeogenesis
pkm00020  Citrate cycle (TCA cycle)
pkm00030  Pentose phosphate pathway
pkm00053  Ascorbate and aldarate metabolism
pkm00071  Fatty acid degradation
pkm00230  Purine metabolism
pkm00250  Alanine, aspartate and glutamate metabolism
pkm00260  Glycine, serine and threonine metabolism
pkm00620  Pyruvate metabolism
pkm00710  Carbon fixation by Calvin cycle
pkm00750  Vitamin B6 metabolism
pkm00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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