KEGG   PATHWAY: pleo00020
Entry
pleo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pleomorphomonas sp. SM30
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pleo00020  Citrate cycle (TCA cycle)
pleo00020

Module
pleo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pleo00020]
pleo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pleo00020]
pleo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pleo00020]
pleo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pleo00020]
pleo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pleo00020]
Other DBs
GO: 0006099
Organism
Pleomorphomonas sp. SM30 [GN:pleo]
Gene
OHA_1_00134  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
OHA_1_03013  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
OHA_1_00014  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OHA_1_03222  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
OHA_1_03221  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
OHA_1_03219  lpd3; dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
OHA_1_00760  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OHA_1_03223  sucD; succinate-CoA ligase [KO:K01902] [EC:6.2.1.5]
OHA_1_03225  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
OHA_1_01222  cat1; succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
OHA_1_03189  sdhA; fumarate reductase [KO:K00239] [EC:1.3.5.1]
OHA_1_03188  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
OHA_1_03191  sdhC; succinate dehydrogenase [KO:K00241]
OHA_1_03190  sdhD; succinate dehydrogenase [KO:K00242]
OHA_1_01422  ttdA; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
OHA_1_03226  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OHA_1_02911  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
OHA_1_01864  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
OHA_1_03525  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
OHA_1_00755  acoA; pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
OHA_1_00757  acoB; pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
OHA_1_00758  aceF; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
OHA_1_03390  porA; pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
OHA_1_03391  porB; pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
OHA_1_03389  padE; NADH-dependent phenylglyoxylate dehydrogenase subunit gamma [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pleo00010  Glycolysis / Gluconeogenesis
pleo00053  Ascorbate and aldarate metabolism
pleo00061  Fatty acid biosynthesis
pleo00071  Fatty acid degradation
pleo00190  Oxidative phosphorylation
pleo00220  Arginine biosynthesis
pleo00250  Alanine, aspartate and glutamate metabolism
pleo00280  Valine, leucine and isoleucine degradation
pleo00350  Tyrosine metabolism
pleo00470  D-Amino acid metabolism
pleo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system