KEGG   PATHWAY: pmot00020
Entry
pmot00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas monteilii SB3101
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmot00020  Citrate cycle (TCA cycle)
pmot00020

Module
pmot_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pmot00020]
pmot_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pmot00020]
pmot_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmot00020]
pmot_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pmot00020]
pmot_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmot00020]
Other DBs
GO: 0006099
Organism
Pseudomonas monteilii SB3101 [GN:pmot]
Gene
X970_16840  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
X970_06415  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
X970_07540  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
X970_15945  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
X970_15950  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
X970_16815  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
X970_16810  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
X970_25420  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
X970_16805  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
X970_17935  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
X970_16795  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
X970_16800  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
X970_26445  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
X970_16825  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
X970_16820  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
X970_16835  succinate dehydrogenase [KO:K00241]
X970_16830  succinate dehydrogenase [KO:K00242]
X970_20780  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
X970_04880  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
X970_03085  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
X970_01675  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
X970_06455  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
X970_02250  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
X970_13975  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
X970_07390  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
X970_19030  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
X970_25325  acetyl-CoA carboxylase subunit alpha [KO:K01959] [EC:6.4.1.1]
X970_25320  pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
X970_27065  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
X970_27520  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
X970_27515  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
X970_01180  acetoin dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmot00010  Glycolysis / Gluconeogenesis
pmot00053  Ascorbate and aldarate metabolism
pmot00061  Fatty acid biosynthesis
pmot00071  Fatty acid degradation
pmot00190  Oxidative phosphorylation
pmot00220  Arginine biosynthesis
pmot00250  Alanine, aspartate and glutamate metabolism
pmot00280  Valine, leucine and isoleucine degradation
pmot00350  Tyrosine metabolism
pmot00470  D-Amino acid metabolism
pmot00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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