KEGG   PATHWAY: pmuc00020
Entry
pmuc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Petrimonas mucosa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmuc00020  Citrate cycle (TCA cycle)
pmuc00020

Module
pmuc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pmuc00020]
pmuc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmuc00020]
pmuc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pmuc00020]
pmuc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmuc00020]
Other DBs
GO: 0006099
Organism
Petrimonas mucosa [GN:pmuc]
Gene
ING2E5A_1114  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
ING2E5A_1112  ACO2; Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
ING2E5A_1113  icd1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ING2E5A_1115  icd3; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ING2E5A_1055  sucA; 2-oxoglutarate dehydrogenase E1 component {ECO:0000255 [KO:K00164] [EC:1.2.4.2]
ING2E5A_1054  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
ING2E5A_1266  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ING2E5A_1803  pdhD3; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ING2E5A_1492  acoL; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ING2E5A_1159  pdhD1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ING2E5A_0962  vorB; Ketoisovalerate oxidoreductase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ING2E5A_1057  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ING2E5A_0963  vorA1; Ketoisovalerate oxidoreductase subunit VorA [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ING2E5A_1056  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ING2E5A_0964  vorA3; Ketoisovalerate oxidoreductase subunit VorA [KO:K00177] [EC:1.2.7.3]
ING2E5A_0961  4Fe-4S binding domain protein {ECO:0000313 [KO:K00176] [EC:1.2.7.3]
ING2E5A_0952  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
ING2E5A_0953  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000255 [KO:K01903] [EC:6.2.1.5]
ING2E5A_3032  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ING2E5A_3033  Succinate dehydrogenase {ECO:0000313 [KO:K00240] [EC:1.3.5.1]
ING2E5A_3031  Succinate dehydrogenase subunit C {ECO:0000313 [KO:K00241]
ING2E5A_0662  fumA; Fumarate hydratase class I, aerobic {ECO:0000303 [KO:K01676] [EC:4.2.1.2]
ING2E5A_2725  mdh; Malate dehydrogenase {ECO:0000255 [KO:K00024] [EC:1.1.1.37]
ING2E5A_0270  pycB1; Pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
ING2E5A_1826  pycB3; Pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
ING2E5A_0390  pckA; Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000255 [KO:K01610] [EC:4.1.1.49]
ING2E5A_1489  acoA; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
ING2E5A_1806  pdhA; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
ING2E5A_1490  pdhB1; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
ING2E5A_1805  pdhB3; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
ING2E5A_1491  pdhC3; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ING2E5A_1158  pdhC1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ING2E5A_1804  pdhC5; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ING2E5A_1264  dlaT; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ING2E5A_2667  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmuc00010  Glycolysis / Gluconeogenesis
pmuc00053  Ascorbate and aldarate metabolism
pmuc00061  Fatty acid biosynthesis
pmuc00190  Oxidative phosphorylation
pmuc00220  Arginine biosynthesis
pmuc00250  Alanine, aspartate and glutamate metabolism
pmuc00280  Valine, leucine and isoleucine degradation
pmuc00350  Tyrosine metabolism
pmuc00470  D-Amino acid metabolism
pmuc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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