KEGG   PATHWAY: pol00020
Entry
pol00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Polaromonas sp. JS666
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pol00020  Citrate cycle (TCA cycle)
pol00020

Module
pol_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pol00020]
pol_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pol00020]
pol_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pol00020]
pol_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pol00020]
pol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pol00020]
Other DBs
GO: 0006099
Organism
Polaromonas sp. JS666 [GN:pol]
Gene
Bpro_3605  citrate synthase [KO:K01647] [EC:2.3.3.1]
Bpro_3871  aconitase [KO:K01681] [EC:4.2.1.3]
Bpro_3592  aconitase [KO:K01681] [EC:4.2.1.3]
Bpro_3595  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Bpro_2942  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Bpro_2624  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Bpro_2623  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
Bpro_2622  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bpro_2669  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bpro_4681  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Bpro_4682  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Bpro_3602  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Bpro_3603  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Bpro_3600  succinate dehydrogenase subunit C [KO:K00241]
Bpro_3601  succinate dehydrogenase subunit D [KO:K00242]
Bpro_2046  fumarase [KO:K01676] [EC:4.2.1.2]
Bpro_2047  fumarase [KO:K01679] [EC:4.2.1.2]
Bpro_3598  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Bpro_0160  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Bpro_3831  2-oxo-acid dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
Bpro_2672  2-oxo-acid dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
Bpro_0762  Pyruvate dehydrogenase (lipoamide) [KO:K00161] [EC:1.2.4.1]
Bpro_0763  Transketolase, central region [KO:K00162] [EC:1.2.4.1]
Bpro_2671  Dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Bpro_0764  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pol00010  Glycolysis / Gluconeogenesis
pol00053  Ascorbate and aldarate metabolism
pol00061  Fatty acid biosynthesis
pol00071  Fatty acid degradation
pol00190  Oxidative phosphorylation
pol00220  Arginine biosynthesis
pol00250  Alanine, aspartate and glutamate metabolism
pol00280  Valine, leucine and isoleucine degradation
pol00350  Tyrosine metabolism
pol00470  D-Amino acid metabolism
pol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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