KEGG   PATHWAY: poll00020
Entry
poll00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pollutimonas sp. M17
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
poll00020  Citrate cycle (TCA cycle)
poll00020

Module
poll_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:poll00020]
poll_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:poll00020]
poll_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:poll00020]
poll_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:poll00020]
poll_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:poll00020]
Other DBs
GO: 0006099
Organism
Pollutimonas sp. M17 [GN:poll]
Gene
OEG81_12165  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
OEG81_15185  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
OEG81_07475  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
OEG81_12245  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
OEG81_06045  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
OEG81_12240  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
OEG81_12930  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OEG81_12140  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
OEG81_12135  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
OEG81_12130  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OEG81_08075  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OEG81_08600  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OEG81_08640  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OEG81_10315  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
OEG81_10320  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
OEG81_12180  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OEG81_12175  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
OEG81_12190  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
OEG81_12185  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
OEG81_04170  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
OEG81_09240  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
OEG81_12200  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OEG81_06810  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
OEG81_00945  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
OEG81_08630  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
OEG81_08635  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
poll00010  Glycolysis / Gluconeogenesis
poll00053  Ascorbate and aldarate metabolism
poll00061  Fatty acid biosynthesis
poll00071  Fatty acid degradation
poll00190  Oxidative phosphorylation
poll00220  Arginine biosynthesis
poll00250  Alanine, aspartate and glutamate metabolism
poll00280  Valine, leucine and isoleucine degradation
poll00350  Tyrosine metabolism
poll00470  D-Amino acid metabolism
poll00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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