KEGG   PATHWAY: poq00020
Entry
poq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Polymorphobacter sp. PAMC 29334
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
poq00020  Citrate cycle (TCA cycle)
poq00020

Module
poq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:poq00020]
poq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:poq00020]
poq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:poq00020]
poq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:poq00020]
poq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:poq00020]
Other DBs
GO: 0006099
Organism
Polymorphobacter sp. PAMC 29334 [GN:poq]
Gene
KZX46_14590  citrate synthase [KO:K01647] [EC:2.3.3.1]
KZX46_19395  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KZX46_16070  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KZX46_17180  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KZX46_17175  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KZX46_15795  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KZX46_17165  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KZX46_18310  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KZX46_18305  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KZX46_17185  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KZX46_17190  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KZX46_06540  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KZX46_17240  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KZX46_06545  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KZX46_17225  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KZX46_06530  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KZX46_17250  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KZX46_06535  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KZX46_17245  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KZX46_19215  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KZX46_17200  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KZX46_07515  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KZX46_20425  transketolase [KO:K00163] [EC:1.2.4.1]
KZX46_15810  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KZX46_15805  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
KZX46_15800  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
poq00010  Glycolysis / Gluconeogenesis
poq00053  Ascorbate and aldarate metabolism
poq00061  Fatty acid biosynthesis
poq00071  Fatty acid degradation
poq00190  Oxidative phosphorylation
poq00220  Arginine biosynthesis
poq00250  Alanine, aspartate and glutamate metabolism
poq00280  Valine, leucine and isoleucine degradation
poq00350  Tyrosine metabolism
poq00470  D-Amino acid metabolism
poq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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