KEGG   PATHWAY: ppai00020
Entry
ppai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paraburkholderia pallida
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppai00020  Citrate cycle (TCA cycle)
ppai00020

Module
ppai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppai00020]
ppai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppai00020]
ppai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppai00020]
ppai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppai00020]
ppai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppai00020]
Other DBs
GO: 0006099
Organism
Paraburkholderia pallida [GN:ppai]
Gene
E1956_18080  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
E1956_26570  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
E1956_44105  citrate synthase [KO:K01647] [EC:2.3.3.1]
E1956_06355  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
E1956_08685  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
E1956_10740  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
E1956_26515  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E1956_38230  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E1956_38355  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
E1956_39855  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E1956_06435  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E1956_22160  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E1956_09270  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E1956_09275  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E1956_17485  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E1956_31210  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E1956_09280  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E1956_12130  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E1956_05830  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E1956_05825  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E1956_23200  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
E1956_41735  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
E1956_26555  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E1956_26560  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E1956_26545  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E1956_26550  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E1956_08465  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
E1956_07675  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
E1956_26535  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E1956_42405  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E1956_21785  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
E1956_02645  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
E1956_15745  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
E1956_12140  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
E1956_15750  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
E1956_09990  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
E1956_12135  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppai00010  Glycolysis / Gluconeogenesis
ppai00053  Ascorbate and aldarate metabolism
ppai00061  Fatty acid biosynthesis
ppai00071  Fatty acid degradation
ppai00190  Oxidative phosphorylation
ppai00220  Arginine biosynthesis
ppai00250  Alanine, aspartate and glutamate metabolism
ppai00280  Valine, leucine and isoleucine degradation
ppai00350  Tyrosine metabolism
ppai00470  D-Amino acid metabolism
ppai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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